# TARGET T0393 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0393.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.1977 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.060 0.005 0.192 0.710 0.001 0.014 0.002 0.001 0.002 0.001 0.002 0.003 0.003 0.001 0.001 0.003 2 D 0.014 0.044 0.311 0.460 0.006 0.152 0.001 0.002 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.004 3 A 0.004 0.052 0.037 0.829 0.007 0.037 0.001 0.003 0.001 0.001 0.024 0.002 0.001 0.001 0.001 0.001 4 D 0.001 0.004 0.001 0.005 0.001 0.981 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 5 S 0.001 0.005 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.982 0.001 0.002 0.001 0.001 0.001 6 E 0.001 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.947 0.003 0.001 0.001 0.001 7 Q 0.008 0.032 0.191 0.018 0.001 0.014 0.012 0.001 0.004 0.001 0.012 0.170 0.483 0.002 0.013 0.041 8 R 0.005 0.004 0.130 0.014 0.001 0.022 0.007 0.001 0.001 0.001 0.018 0.011 0.768 0.001 0.003 0.015 9 K 0.011 0.034 0.050 0.043 0.001 0.040 0.001 0.002 0.001 0.001 0.039 0.069 0.701 0.001 0.001 0.008 10 S 0.004 0.024 0.036 0.101 0.001 0.047 0.003 0.001 0.001 0.001 0.028 0.047 0.695 0.002 0.001 0.010 11 L 0.004 0.018 0.080 0.096 0.001 0.015 0.001 0.001 0.001 0.001 0.016 0.043 0.720 0.001 0.002 0.003 12 H 0.001 0.017 0.047 0.105 0.001 0.032 0.001 0.001 0.001 0.001 0.006 0.023 0.756 0.001 0.001 0.008 13 L 0.003 0.008 0.042 0.151 0.001 0.010 0.001 0.001 0.001 0.001 0.020 0.019 0.742 0.001 0.001 0.002 14 A 0.001 0.014 0.056 0.310 0.001 0.005 0.001 0.001 0.001 0.001 0.002 0.025 0.582 0.001 0.001 0.004 15 A 0.001 0.002 0.021 0.228 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.735 0.001 0.001 0.001 16 V 0.001 0.008 0.033 0.234 0.003 0.018 0.002 0.001 0.001 0.001 0.002 0.002 0.696 0.001 0.001 0.001 17 F 0.001 0.010 0.007 0.180 0.008 0.075 0.002 0.002 0.001 0.001 0.007 0.006 0.695 0.002 0.001 0.002 18 T 0.001 0.029 0.007 0.090 0.013 0.031 0.004 0.005 0.001 0.002 0.028 0.029 0.736 0.010 0.003 0.011 19 C 0.003 0.006 0.004 0.014 0.004 0.053 0.006 0.004 0.001 0.002 0.026 0.061 0.790 0.011 0.008 0.007 20 N 0.003 0.008 0.006 0.003 0.001 0.014 0.002 0.002 0.001 0.001 0.095 0.044 0.797 0.002 0.010 0.012 21 F 0.003 0.005 0.005 0.003 0.001 0.005 0.001 0.001 0.001 0.001 0.046 0.188 0.727 0.001 0.002 0.011 22 T 0.001 0.001 0.002 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.008 0.053 0.930 0.001 0.001 0.001 23 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.016 0.974 0.001 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.993 0.001 0.001 0.001 25 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 26 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.997 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 29 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 30 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 31 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 32 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.995 0.004 0.001 0.001 34 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.982 0.009 0.002 0.005 35 K 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 36 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.002 0.001 0.994 0.001 37 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.982 38 L 0.994 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 P 0.001 0.024 0.578 0.004 0.001 0.371 0.002 0.001 0.001 0.001 0.002 0.003 0.011 0.001 0.001 0.002 40 F 0.003 0.009 0.001 0.071 0.003 0.070 0.001 0.002 0.001 0.001 0.794 0.018 0.026 0.001 0.001 0.001 41 D 0.001 0.027 0.004 0.014 0.001 0.007 0.001 0.002 0.001 0.001 0.021 0.892 0.030 0.001 0.001 0.001 42 V 0.003 0.009 0.012 0.063 0.001 0.037 0.005 0.003 0.002 0.001 0.047 0.060 0.733 0.001 0.008 0.015 43 M 0.003 0.014 0.082 0.025 0.001 0.007 0.003 0.001 0.003 0.001 0.021 0.054 0.756 0.001 0.002 0.024 44 L 0.006 0.003 0.018 0.028 0.001 0.019 0.003 0.001 0.001 0.001 0.005 0.018 0.894 0.001 0.001 0.004 45 P 0.001 0.004 0.017 0.007 0.001 0.028 0.001 0.001 0.001 0.001 0.034 0.020 0.883 0.001 0.001 0.002 46 L 0.001 0.011 0.002 0.018 0.001 0.009 0.001 0.001 0.001 0.001 0.032 0.059 0.858 0.002 0.001 0.006 47 I 0.001 0.001 0.003 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.005 0.016 0.963 0.002 0.001 0.001 48 D 0.001 0.002 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.007 0.014 0.966 0.001 0.002 0.002 49 E 0.001 0.003 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.015 0.028 0.925 0.003 0.001 0.018 50 T 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.011 0.979 0.001 0.001 0.002 51 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.005 0.978 0.006 0.001 0.001 52 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.971 0.002 0.005 0.001 53 K 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.900 0.003 0.002 0.085 54 V 0.006 0.001 0.023 0.001 0.001 0.003 0.040 0.001 0.001 0.001 0.004 0.002 0.882 0.023 0.006 0.009 55 H 0.003 0.028 0.070 0.007 0.001 0.008 0.012 0.005 0.001 0.001 0.013 0.016 0.754 0.008 0.050 0.025 56 E 0.007 0.016 0.023 0.030 0.016 0.016 0.128 0.002 0.004 0.004 0.008 0.019 0.244 0.365 0.006 0.112 57 L 0.038 0.029 0.306 0.049 0.001 0.004 0.020 0.030 0.003 0.001 0.013 0.005 0.131 0.003 0.316 0.050 58 E 0.010 0.017 0.115 0.057 0.005 0.302 0.037 0.002 0.032 0.037 0.008 0.029 0.204 0.008 0.004 0.134 59 P 0.152 0.031 0.018 0.016 0.006 0.065 0.004 0.009 0.001 0.001 0.534 0.019 0.129 0.008 0.005 0.005 60 K 0.002 0.086 0.011 0.020 0.003 0.020 0.002 0.007 0.003 0.001 0.060 0.704 0.067 0.006 0.006 0.002 61 T 0.011 0.032 0.060 0.069 0.006 0.021 0.041 0.007 0.006 0.002 0.036 0.080 0.541 0.025 0.025 0.037 62 A 0.016 0.014 0.107 0.050 0.003 0.026 0.008 0.011 0.004 0.003 0.026 0.036 0.562 0.003 0.066 0.064 63 Q 0.019 0.036 0.049 0.046 0.095 0.040 0.114 0.005 0.008 0.013 0.026 0.059 0.168 0.264 0.003 0.054 64 T 0.072 0.058 0.143 0.139 0.002 0.039 0.019 0.070 0.005 0.001 0.036 0.020 0.194 0.002 0.184 0.015 65 G 0.005 0.034 0.115 0.066 0.005 0.138 0.014 0.003 0.033 0.078 0.034 0.045 0.307 0.004 0.002 0.119 66 P 0.243 0.050 0.039 0.137 0.004 0.034 0.004 0.008 0.002 0.001 0.176 0.093 0.192 0.006 0.006 0.007 67 A 0.004 0.062 0.079 0.099 0.006 0.070 0.006 0.003 0.004 0.002 0.046 0.308 0.286 0.008 0.006 0.011 68 I 0.008 0.045 0.064 0.092 0.028 0.045 0.040 0.006 0.001 0.001 0.036 0.054 0.520 0.034 0.004 0.021 69 R 0.010 0.031 0.043 0.062 0.003 0.115 0.019 0.028 0.002 0.002 0.062 0.038 0.506 0.006 0.051 0.022 70 Y 0.007 0.102 0.082 0.033 0.002 0.028 0.012 0.006 0.017 0.017 0.084 0.078 0.298 0.006 0.012 0.215 71 D 0.018 0.003 0.010 0.005 0.001 0.381 0.007 0.001 0.001 0.002 0.041 0.142 0.374 0.006 0.004 0.004 72 E 0.002 0.016 0.011 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.586 0.027 0.343 0.001 0.004 0.004 73 N 0.001 0.013 0.003 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.011 0.771 0.192 0.001 0.001 0.003 74 V 0.001 0.001 0.004 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.001 75 I 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.008 0.979 0.001 0.001 0.001 76 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.010 0.985 0.001 0.001 0.001 77 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.002 78 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.990 0.002 0.001 0.001 79 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 80 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.003 81 M 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.002 0.003 0.942 0.016 0.003 0.026 82 L 0.001 0.001 0.032 0.002 0.001 0.002 0.043 0.001 0.001 0.001 0.003 0.005 0.835 0.044 0.018 0.012 83 A 0.004 0.010 0.024 0.005 0.001 0.015 0.011 0.003 0.001 0.001 0.006 0.009 0.797 0.010 0.042 0.063 84 D 0.012 0.033 0.051 0.014 0.001 0.010 0.010 0.002 0.005 0.005 0.034 0.022 0.503 0.016 0.011 0.271 85 D 0.011 0.002 0.013 0.002 0.001 0.257 0.004 0.001 0.001 0.001 0.028 0.079 0.595 0.002 0.004 0.003 86 P 0.001 0.013 0.002 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.714 0.043 0.218 0.001 0.001 0.002 87 A 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.831 0.148 0.001 0.001 0.001 88 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.990 0.001 0.001 0.001 89 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 90 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.989 0.001 0.001 0.002 91 L 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.991 0.001 0.001 0.001 92 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.991 0.001 0.001 0.001 93 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.986 0.001 0.001 0.006 94 L 0.001 0.002 0.006 0.002 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.004 0.959 0.006 0.001 0.012 95 L 0.001 0.003 0.015 0.004 0.001 0.003 0.004 0.001 0.001 0.001 0.004 0.004 0.944 0.004 0.006 0.008 96 S 0.002 0.005 0.010 0.006 0.001 0.014 0.005 0.001 0.001 0.001 0.005 0.018 0.900 0.015 0.007 0.012 97 R 0.007 0.014 0.019 0.014 0.001 0.004 0.002 0.001 0.001 0.001 0.037 0.012 0.829 0.003 0.013 0.044 98 S 0.007 0.025 0.053 0.024 0.002 0.039 0.017 0.001 0.002 0.001 0.006 0.066 0.656 0.034 0.005 0.064 99 I 0.013 0.011 0.115 0.028 0.002 0.012 0.025 0.002 0.001 0.001 0.039 0.006 0.702 0.009 0.025 0.013 100 H 0.004 0.055 0.050 0.050 0.005 0.079 0.018 0.007 0.003 0.002 0.011 0.070 0.579 0.022 0.014 0.031 101 E 0.024 0.039 0.035 0.060 0.012 0.033 0.035 0.009 0.005 0.003 0.132 0.021 0.460 0.040 0.025 0.067 102 R 0.019 0.054 0.143 0.049 0.027 0.033 0.112 0.016 0.009 0.004 0.036 0.092 0.212 0.093 0.057 0.044 103 Q 0.040 0.039 0.141 0.070 0.016 0.041 0.096 0.041 0.012 0.007 0.044 0.027 0.236 0.028 0.109 0.055