# TARGET T0393 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0393.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.1977 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.026 0.649 0.141 0.028 0.088 0.025 0.007 0.002 0.033 0.001 0.001 2 D 0.016 0.364 0.426 0.014 0.033 0.114 0.006 0.001 0.023 0.001 0.003 3 A 0.062 0.427 0.338 0.043 0.042 0.058 0.003 0.001 0.021 0.002 0.003 4 D 0.027 0.203 0.490 0.012 0.064 0.072 0.013 0.001 0.109 0.008 0.001 5 S 0.903 0.002 0.064 0.013 0.004 0.003 0.001 0.001 0.001 0.003 0.005 6 E 0.928 0.002 0.013 0.039 0.002 0.006 0.006 0.002 0.001 0.001 0.001 7 Q 0.638 0.017 0.019 0.305 0.003 0.008 0.006 0.001 0.003 0.001 0.001 8 R 0.861 0.031 0.067 0.015 0.004 0.005 0.012 0.001 0.004 0.001 0.001 9 K 0.967 0.014 0.008 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 10 S 0.957 0.012 0.004 0.016 0.007 0.001 0.001 0.001 0.003 0.001 0.001 11 L 0.892 0.031 0.016 0.034 0.015 0.003 0.001 0.001 0.009 0.001 0.001 12 H 0.929 0.022 0.020 0.015 0.004 0.007 0.001 0.001 0.003 0.001 0.001 13 L 0.977 0.006 0.006 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.981 0.005 0.002 0.009 0.003 0.001 0.001 0.001 0.001 0.001 0.001 15 A 0.963 0.013 0.005 0.010 0.005 0.002 0.001 0.001 0.001 0.001 0.001 16 V 0.941 0.042 0.005 0.006 0.002 0.001 0.001 0.001 0.002 0.001 0.001 17 F 0.925 0.022 0.013 0.015 0.017 0.004 0.001 0.001 0.005 0.001 0.001 18 T 0.895 0.032 0.011 0.045 0.007 0.003 0.001 0.001 0.006 0.001 0.001 19 C 0.894 0.011 0.022 0.053 0.008 0.004 0.003 0.001 0.003 0.001 0.001 20 N 0.796 0.008 0.021 0.118 0.012 0.011 0.024 0.005 0.003 0.003 0.001 21 F 0.933 0.007 0.010 0.036 0.004 0.004 0.004 0.001 0.001 0.001 0.001 22 T 0.972 0.006 0.006 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 23 N 0.988 0.002 0.002 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 24 H 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 M 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 K 0.991 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 K 0.981 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 Y 0.122 0.001 0.006 0.859 0.001 0.001 0.011 0.001 0.001 0.001 0.001 37 N 0.013 0.001 0.005 0.011 0.001 0.002 0.823 0.138 0.001 0.005 0.001 38 L 0.026 0.195 0.668 0.008 0.012 0.026 0.006 0.001 0.056 0.001 0.001 39 P 0.340 0.002 0.576 0.019 0.001 0.045 0.001 0.001 0.001 0.001 0.013 40 F 0.747 0.069 0.060 0.080 0.016 0.014 0.003 0.004 0.005 0.001 0.001 41 D 0.799 0.035 0.057 0.065 0.018 0.012 0.007 0.001 0.005 0.001 0.001 42 V 0.666 0.127 0.045 0.115 0.021 0.011 0.003 0.001 0.011 0.001 0.001 43 M 0.822 0.070 0.042 0.038 0.014 0.008 0.001 0.001 0.005 0.001 0.001 44 L 0.838 0.039 0.061 0.009 0.018 0.006 0.002 0.001 0.028 0.001 0.001 45 P 0.979 0.001 0.013 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 L 0.872 0.006 0.018 0.085 0.005 0.007 0.001 0.001 0.005 0.001 0.001 47 I 0.959 0.006 0.015 0.014 0.001 0.003 0.001 0.001 0.001 0.001 0.001 48 D 0.973 0.004 0.003 0.014 0.001 0.001 0.003 0.001 0.001 0.001 0.001 49 E 0.960 0.001 0.003 0.028 0.004 0.001 0.001 0.001 0.001 0.001 0.001 50 T 0.874 0.017 0.010 0.085 0.002 0.004 0.001 0.001 0.007 0.001 0.001 51 A 0.992 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 R 0.966 0.001 0.001 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.947 0.001 0.002 0.041 0.001 0.001 0.005 0.001 0.001 0.001 0.001 54 V 0.896 0.010 0.014 0.071 0.001 0.002 0.004 0.001 0.002 0.001 0.001 55 H 0.902 0.026 0.013 0.039 0.003 0.002 0.011 0.001 0.004 0.001 0.001 56 E 0.763 0.036 0.054 0.097 0.016 0.014 0.010 0.001 0.009 0.001 0.001 57 L 0.460 0.068 0.099 0.332 0.006 0.013 0.011 0.001 0.009 0.001 0.001 58 E 0.059 0.106 0.342 0.012 0.046 0.015 0.020 0.001 0.387 0.012 0.001 59 P 0.580 0.002 0.359 0.017 0.001 0.011 0.001 0.001 0.002 0.001 0.028 60 K 0.675 0.038 0.101 0.139 0.011 0.021 0.007 0.003 0.004 0.001 0.001 61 T 0.487 0.139 0.123 0.169 0.033 0.022 0.010 0.003 0.014 0.001 0.001 62 A 0.337 0.200 0.164 0.131 0.085 0.028 0.022 0.005 0.027 0.003 0.001 63 Q 0.338 0.330 0.166 0.066 0.043 0.028 0.008 0.001 0.020 0.001 0.001 64 T 0.218 0.260 0.217 0.205 0.036 0.027 0.016 0.002 0.016 0.002 0.002 65 G 0.063 0.113 0.224 0.008 0.331 0.009 0.021 0.019 0.108 0.104 0.001 66 P 0.370 0.014 0.553 0.021 0.006 0.019 0.001 0.001 0.003 0.001 0.012 67 A 0.331 0.172 0.328 0.067 0.030 0.052 0.004 0.001 0.013 0.001 0.001 68 I 0.446 0.207 0.186 0.069 0.029 0.035 0.004 0.001 0.022 0.001 0.001 69 R 0.324 0.203 0.167 0.163 0.045 0.046 0.023 0.001 0.026 0.001 0.001 70 Y 0.274 0.131 0.165 0.225 0.077 0.059 0.024 0.008 0.027 0.010 0.001 71 D 0.156 0.081 0.367 0.057 0.049 0.136 0.028 0.002 0.110 0.014 0.001 72 E 0.977 0.001 0.011 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 N 0.971 0.001 0.002 0.019 0.001 0.001 0.003 0.002 0.001 0.001 0.001 74 V 0.937 0.011 0.004 0.043 0.001 0.001 0.001 0.001 0.002 0.001 0.001 75 I 0.974 0.006 0.006 0.008 0.002 0.001 0.001 0.001 0.002 0.001 0.001 76 G 0.974 0.001 0.002 0.011 0.005 0.001 0.003 0.001 0.001 0.001 0.001 77 N 0.929 0.002 0.004 0.060 0.002 0.001 0.001 0.001 0.001 0.001 0.001 78 H 0.874 0.013 0.017 0.077 0.003 0.004 0.002 0.001 0.008 0.001 0.001 79 L 0.983 0.002 0.006 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 R 0.979 0.002 0.002 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 81 M 0.915 0.006 0.006 0.064 0.004 0.002 0.001 0.001 0.002 0.001 0.001 82 L 0.788 0.023 0.021 0.146 0.003 0.004 0.006 0.001 0.009 0.001 0.001 83 A 0.766 0.018 0.053 0.089 0.008 0.013 0.045 0.001 0.006 0.001 0.001 84 D 0.287 0.030 0.079 0.519 0.010 0.035 0.027 0.004 0.007 0.002 0.001 85 D 0.290 0.049 0.426 0.022 0.017 0.033 0.034 0.002 0.116 0.011 0.001 86 P 0.976 0.001 0.017 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 A 0.941 0.001 0.006 0.045 0.001 0.005 0.001 0.001 0.001 0.001 0.001 88 M 0.987 0.002 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 Q 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 R 0.990 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 L 0.985 0.003 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Y 0.988 0.002 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 E 0.978 0.003 0.002 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 L 0.926 0.006 0.009 0.052 0.002 0.002 0.001 0.001 0.002 0.001 0.001 95 L 0.841 0.020 0.025 0.095 0.004 0.006 0.004 0.001 0.005 0.001 0.001 96 S 0.805 0.023 0.038 0.084 0.009 0.011 0.023 0.001 0.005 0.001 0.001 97 R 0.794 0.034 0.034 0.100 0.013 0.007 0.011 0.001 0.004 0.001 0.001 98 S 0.616 0.086 0.084 0.137 0.025 0.022 0.012 0.001 0.015 0.001 0.001 99 I 0.671 0.092 0.101 0.083 0.015 0.017 0.008 0.001 0.011 0.001 0.001 100 H 0.585 0.097 0.093 0.136 0.027 0.023 0.021 0.002 0.015 0.002 0.001 101 E 0.517 0.080 0.128 0.169 0.031 0.023 0.028 0.003 0.016 0.003 0.001 102 R 0.358 0.150 0.181 0.197 0.030 0.025 0.029 0.004 0.023 0.002 0.001 103 Q 0.254 0.191 0.284 0.116 0.039 0.042 0.037 0.004 0.029 0.003 0.001