# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	9.94e-13		
1vmeA	410	8.054	c.23.5.1,d.157.1.3	108893,108894
2i5tA	188	10.36		
2hx5A	152	10.49	d.38.1.1	136837
2q9uA	414	16.87		
2fvgA	340	27.02	b.49.3.1,c.56.5.4	134201,134202
3c24A	286	29.98		
1khyA	148	34.50	a.174.1.1	77410
2icrA	237	44.86		
2jgdA	933	45.99		
1h3gA	601	50.94	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
2brxA	244	51.11	c.73.1.3	129028
1kngA	156	53.79	c.47.1.10	72777
1ueoA	63	55.99	j.107.1.1	99269
1tf1A	198	57.97	d.110.2.2	106826
2ftsA	419	58.86	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1me8A	503	59.93	c.1.5.1	79028
1j5yA	187	61.62	a.4.5.1,d.94.2.1	71592,71593
1bvqA	141	64.47	d.38.1.1	38542
1e5dA	402	64.50	c.23.5.1,d.157.1.3	31208,42061
1z7gA	217	67.32	c.61.1.1	124624
2hyxA	352	69.80		
3bjnA	165	74.68		
2jbhA	225	75.41		
1p9rA	418	77.23	c.37.1.11	94399
1n0qA	93	77.50	k.37.1.1	79754
1adtA	356	78.96	a.54.1.1,g.51.1.1,g.51.1.1	17887,45362,45368
3b57A	209	79.22		
3b5qA	482	84.89		
1r4wA	226	86.51	c.47.1.13	97050
2rg4A	216	86.97		
2ozlB	341	88.74	c.36.1.7,c.48.1.2	139447,139448
2d0bA	310	88.78