# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	1.50e-12		
2i5tA	188	6.507		
1vmeA	410	8.551	c.23.5.1,d.157.1.3	108893,108894
2hx5A	152	11.02	d.38.1.1	136837
2q9uA	414	14.31		
1khyA	148	21.24	a.174.1.1	77410
1kngA	156	25.91	c.47.1.10	72777
2jgdA	933	27.34		
3c24A	286	31.27		
2fvgA	340	32.11	b.49.3.1,c.56.5.4	134201,134202
1me8A	503	37.45	c.1.5.1	79028
2icrA	237	40.48		
2ftsA	419	42.82	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1bvqA	141	43.75	d.38.1.1	38542
2hyxA	352	53.03		
1h3gA	601	54.85	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
1ueoA	63	55.87	j.107.1.1	99269
1z7gA	217	57.23	c.61.1.1	124624
1lxjA	104	60.38	d.58.48.1	84736
2brxA	244	61.58	c.73.1.3	129028
1lxnA	99	62.41	d.58.48.1	84737
2d0bA	310	64.96		
1tf1A	198	68.05	d.110.2.2	106826
1nthA	458	68.34	c.1.25.1	80730
1r4wA	226	70.19	c.47.1.13	97050
2jbhA	225	71.41		
1p9rA	418	73.72	c.37.1.11	94399
1e5dA	402	73.73	c.23.5.1,d.157.1.3	31208,42061
2nqrA	411	74.42	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
3b5qA	482	74.56		
3b57A	209	76.01		
1ls1A	295	77.91	a.24.13.1,c.37.1.10	78170,78171
1pyiA	96	80.08	g.38.1.1,h.1.3.1	45079,45512
1adtA	356	86.36	a.54.1.1,g.51.1.1,g.51.1.1	17887,45362,45368
1a98A	152	86.45	c.61.1.1	34021
2f82A	450	88.94