# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	5.83e-11		
2i5tA	188	4.887		
1vmeA	410	9.283	c.23.5.1,d.157.1.3	108893,108894
2hx5A	152	10.69	d.38.1.1	136837
1bgf	124	22.20		
2jgdA	933	27.01		
2ftsA	419	28.58	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1h3gA	601	28.75	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
2g3kA	94	29.42	a.24.28.1	134562
2fvgA	340	32.03	b.49.3.1,c.56.5.4	134201,134202
2q9uA	414	35.64		
1p9rA	418	38.19	c.37.1.11	94399
1j5yA	187	39.19	a.4.5.1,d.94.2.1	71592,71593
1bkcI	256	46.36	d.92.1.10	40334
2io8A	619	46.86	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
3c24A	286	51.20		
1khyA	148	55.02	a.174.1.1	77410
1ueoA	63	55.07	j.107.1.1	99269
2ou1A	77	59.50		
2icrA	237	61.13		
2co5A	99	61.50		
2nqrA	411	61.53	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1yspA	181	62.19		
2j9uA	96	63.68	a.24.28.1	138155
1n0qA	93	64.16	k.37.1.1	79754
1odoA	408	65.22	a.104.1.1	92783
1a98A	152	70.78	c.61.1.1	34021
1x0vA	354	74.65		
2b0jA	358	78.08	a.100.1.11,c.2.1.6	127639,127640
2gf6A	135	80.69	d.38.1.1	135077
3bjnA	165	82.24		
2brxA	244	83.13	c.73.1.3	129028
1uohA	226	83.43	d.211.1.1	99690
1z7gA	217	83.71	c.61.1.1	124624
2rfmA	192	84.26		
2jabA	136	85.70		
2e8gA	241	87.71		
1qjdA	571	87.99	a.138.1.3,c.3.1.4,d.168.1.1	19695,30432,42315
2dkyA	91	89.62		
1tf1A	198	89.81	d.110.2.2	106826
2qisA	374	89.82