# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	8.48e-16		
2i5tA	188	3.748		
1vmeA	410	4.295	c.23.5.1,d.157.1.3	108893,108894
2hx5A	152	9.674	d.38.1.1	136837
3c24A	286	27.50		
1odoA	408	31.55	a.104.1.1	92783
2icrA	237	32.11		
2jgdA	933	33.31		
1kngA	156	33.50	c.47.1.10	72777
2fvgA	340	37.21	b.49.3.1,c.56.5.4	134201,134202
1nfn	191	43.18		
3b5qA	482	43.88		
2ftsA	419	44.64	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1tf1A	198	45.49	d.110.2.2	106826
3bjnA	165	46.92		
1pyiA	96	49.20	g.38.1.1,h.1.3.1	45079,45512
2q9uA	414	51.71		
1h3gA	601	54.44	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
2b0jA	358	54.74	a.100.1.11,c.2.1.6	127639,127640
1oafA	261	57.75	a.93.1.1	86734
2jbhA	225	60.68		
1khyA	148	62.35	a.174.1.1	77410
1ueoA	63	70.03	j.107.1.1	99269
1bgf	124	71.01		
2h6bA	250	71.60		
1adtA	356	71.90	a.54.1.1,g.51.1.1,g.51.1.1	17887,45362,45368
1xmpA	170	72.73	c.23.8.1	115521
2b0oE	301	74.19		
1bvqA	141	75.19	d.38.1.1	38542
1bkcI	256	75.38	d.92.1.10	40334
1n0qA	93	79.89	k.37.1.1	79754
1sfxA	109	80.15	a.4.5.50	105505
2ef8A	84	83.41		
1j5yA	187	83.93	a.4.5.1,d.94.2.1	71592,71593
1qqiA	104	87.08	a.4.6.1	16233
1x0vA	354	88.96		
3b57A	209	89.50