# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	1.41e-14		
1vmeA	410	3.494	c.23.5.1,d.157.1.3	108893,108894
2i5tA	188	4.293		
2hx5A	152	5.394	d.38.1.1	136837
3c24A	286	16.19		
2b0jA	358	20.80	a.100.1.11,c.2.1.6	127639,127640
2q9uA	414	22.54		
1khyA	148	25.62	a.174.1.1	77410
1h3gA	601	26.22	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
2fvgA	340	26.78	b.49.3.1,c.56.5.4	134201,134202
2ftsA	419	28.33	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1tf1A	198	29.76	d.110.2.2	106826
3bjnA	165	35.53		
2icrA	237	39.31		
2co5A	99	39.48		
2jgdA	933	41.44		
1odoA	408	41.47	a.104.1.1	92783
1x0vA	354	56.20		
3b5qA	482	57.15		
1xmpA	170	58.22	c.23.8.1	115521
3b57A	209	62.02		
1ueoA	63	65.32	j.107.1.1	99269
1bvqA	141	70.75	d.38.1.1	38542
1adtA	356	71.32	a.54.1.1,g.51.1.1,g.51.1.1	17887,45362,45368
1lxjA	104	72.15	d.58.48.1	84736
2jbhA	225	75.51		
1u11A	182	75.54	c.23.8.1	107576
2ef8A	84	77.94		
1lxnA	99	79.92	d.58.48.1	84737
1r4wA	226	79.95	c.47.1.13	97050
2d2jA	329	83.07	c.1.9.3	131175
1kngA	156	85.78	c.47.1.10	72777
2uytA	489	86.91		
1x7yB	342	86.95	c.36.1.7,c.48.1.2	114945,114946
1mp1A	111	86.96	a.188.1.1	91382
2g3kA	94	87.85	a.24.28.1	134562
2nqrA	411	88.45	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492