# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	1.17e-11		
1kngA	156	2.421	c.47.1.10	72777
1vmeA	410	4.189	c.23.5.1,d.157.1.3	108893,108894
2yvlA	248	7.969		
2i5tA	188	8.497		
1xmpA	170	11.20	c.23.8.1	115521
1khyA	148	11.54	a.174.1.1	77410
2g3kA	94	16.55	a.24.28.1	134562
1u11A	182	16.85	c.23.8.1	107576
1w85B	324	18.08	c.36.1.7,c.48.1.2	114336,114337
2ywxA	157	20.83		
1a98A	152	22.84	c.61.1.1	34021
1sfxA	109	32.62	a.4.5.50	105505
2fvgA	340	32.79	b.49.3.1,c.56.5.4	134201,134202
1z3aA	168	33.28	c.97.1.2	124396
1n45A	233	39.56	a.132.1.1	79981
2pbfA	227	42.32		
1r4wA	226	42.67	c.47.1.13	97050
1uhvA	500	44.19	b.71.1.2,c.1.8.3	99402,99403
2j9wA	102	49.08		
2q9uA	414	53.46		
1adtA	356	54.12	a.54.1.1,g.51.1.1,g.51.1.1	17887,45362,45368
1nulA	152	54.94	c.61.1.1	34011
1qqiA	104	56.61	a.4.6.1	16233
2qrvB	230	57.67		
2ftsA	419	57.93	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1yqhA	109	58.87	d.58.48.1	123886
1lxjA	104	60.53	d.58.48.1	84736
1zx0A	236	62.71	c.66.1.16	125757
1of8A	370	63.04	c.1.10.4	92819
1qmgA	524	63.70	a.100.1.2,c.2.1.6	18785,30182
2fnjB	118	63.74	d.15.1.1	133819
2bk6A	156	65.39	a.25.1.1	128660
1s9rA	410	66.54	d.126.1.4	98758
1euvB	86	66.69	d.15.1.1	37598
1lxnA	99	67.83	d.58.48.1	84737
2ac4A	309	69.65		
2nrrA	159	70.92		
1opc	110	72.39		
2j9uA	96	72.40	a.24.28.1	138155
2ozlB	341	80.99	c.36.1.7,c.48.1.2	139447,139448
1sddA	306	81.14	b.6.1.3,b.6.1.3	105431,105432
1c7iA	489	82.95	c.69.1.1	34632
1ak4C	145	85.08	a.73.1.1	18321
2h6bA	250	85.36		
1qczA	169	85.40	c.23.8.1	31276
1xe1A	116	86.94	b.43.3.1	109571
2icrA	237	87.78