Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2i76A	4.7683e-01	2i76A/T0393-2i76A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yrlA	3.4455e+00	1yrlA/T0393-1yrlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1np3A	1.2537e+01	1np3A/T0393-1np3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
2ahrA	1.5463e+01	2ahrA/T0393-2ahrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.10 c.2.1.6
2uytA	2.2782e+01	2uytA/T0393-2uytA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qmgA	2.5485e+01	1qmgA/T0393-1qmgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
1khyA	2.7297e+01	1khyA/T0393-1khyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.174.1.1
2a4dA	2.7780e+01	2a4dA/T0393-2a4dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.20.1.1
1qq9A	3.0064e+01	1qq9A/T0393-1qq9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.5.4
1ybdA	3.1712e+01	1ybdA/T0393-1ybdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.73.1.3
1wdyA	3.4731e+01	1wdyA/T0393-1wdyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.1.1
2f0xA	3.7060e+01	2f0xA/T0393-2f0xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.38.1.5
2co5A	3.7212e+01	2co5A/T0393-2co5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yhlA	3.8390e+01	1yhlA/T0393-1yhlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ustA	4.4706e+01	1ustA/T0393-1ustA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.13
1gp8A	4.7673e+01	1gp8A/T0393-1gp8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	j.58.1.1
2bneA	5.5236e+01	2bneA/T0393-2bneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.73.1.3
1n0qA	5.7601e+01	1n0qA/T0393-1n0qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.37.1.1
1rw1A	6.5194e+01	1rw1A/T0393-1rw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2izzA	6.6129e+01	2izzA/T0393-2izzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001