# TARGET T0393 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0393.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 25.1116 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.007 0.014 0.607 0.001 0.001 0.002 0.001 0.001 0.075 0.034 0.001 0.237 0.018 2 D 0.003 0.037 0.666 0.001 0.001 0.002 0.002 0.001 0.089 0.027 0.003 0.011 0.156 3 A 0.002 0.066 0.683 0.003 0.005 0.007 0.001 0.002 0.052 0.105 0.009 0.045 0.020 4 D 0.001 0.008 0.820 0.004 0.013 0.022 0.001 0.001 0.017 0.073 0.013 0.003 0.027 5 S 0.001 0.002 0.038 0.001 0.210 0.459 0.001 0.001 0.001 0.044 0.242 0.001 0.002 6 E 0.001 0.002 0.025 0.001 0.122 0.547 0.001 0.001 0.001 0.021 0.278 0.001 0.001 7 Q 0.001 0.005 0.071 0.001 0.087 0.714 0.001 0.001 0.001 0.040 0.075 0.001 0.004 8 R 0.001 0.005 0.069 0.001 0.021 0.858 0.001 0.001 0.001 0.022 0.020 0.001 0.003 9 K 0.001 0.002 0.014 0.001 0.016 0.938 0.001 0.001 0.001 0.007 0.019 0.001 0.002 10 S 0.001 0.001 0.006 0.001 0.017 0.944 0.001 0.001 0.001 0.004 0.021 0.001 0.003 11 L 0.001 0.001 0.003 0.001 0.007 0.979 0.001 0.001 0.001 0.002 0.005 0.001 0.001 12 H 0.001 0.001 0.001 0.001 0.003 0.990 0.001 0.001 0.001 0.001 0.003 0.001 0.001 13 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 16 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 17 F 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 18 T 0.001 0.001 0.001 0.001 0.002 0.986 0.001 0.001 0.001 0.002 0.009 0.001 0.001 19 C 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.006 0.001 0.001 20 N 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.002 0.006 0.001 0.001 21 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 22 T 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 N 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 M 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 34 K 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.008 0.001 0.001 35 K 0.001 0.001 0.001 0.001 0.007 0.961 0.001 0.001 0.001 0.001 0.029 0.001 0.001 36 Y 0.001 0.001 0.010 0.001 0.015 0.461 0.001 0.001 0.001 0.023 0.490 0.001 0.001 37 N 0.001 0.002 0.088 0.001 0.016 0.068 0.001 0.001 0.001 0.045 0.778 0.001 0.001 38 L 0.001 0.011 0.826 0.001 0.002 0.012 0.001 0.001 0.008 0.127 0.010 0.003 0.001 39 P 0.001 0.006 0.901 0.001 0.002 0.006 0.001 0.001 0.007 0.066 0.009 0.001 0.003 40 F 0.001 0.009 0.259 0.001 0.212 0.358 0.001 0.001 0.011 0.076 0.070 0.001 0.002 41 D 0.001 0.002 0.033 0.001 0.402 0.471 0.001 0.001 0.005 0.017 0.067 0.001 0.001 42 V 0.001 0.003 0.026 0.001 0.289 0.605 0.001 0.001 0.010 0.013 0.048 0.002 0.002 43 M 0.001 0.007 0.033 0.001 0.077 0.828 0.001 0.002 0.011 0.013 0.025 0.001 0.004 44 L 0.001 0.003 0.036 0.001 0.030 0.879 0.001 0.001 0.002 0.025 0.022 0.002 0.001 45 P 0.001 0.001 0.011 0.001 0.046 0.879 0.001 0.001 0.001 0.006 0.055 0.001 0.001 46 L 0.001 0.001 0.006 0.001 0.068 0.877 0.001 0.001 0.001 0.006 0.039 0.001 0.001 47 I 0.001 0.001 0.018 0.001 0.060 0.901 0.001 0.001 0.001 0.007 0.010 0.001 0.001 48 D 0.001 0.001 0.003 0.001 0.039 0.938 0.001 0.001 0.001 0.002 0.017 0.001 0.001 49 E 0.001 0.001 0.002 0.001 0.021 0.929 0.001 0.001 0.001 0.004 0.044 0.001 0.001 50 T 0.001 0.001 0.011 0.001 0.016 0.952 0.001 0.001 0.001 0.006 0.014 0.001 0.001 51 A 0.001 0.001 0.001 0.001 0.006 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 52 R 0.001 0.001 0.001 0.001 0.011 0.966 0.001 0.001 0.001 0.001 0.021 0.001 0.001 53 K 0.001 0.001 0.002 0.001 0.018 0.946 0.001 0.001 0.001 0.001 0.032 0.001 0.001 54 V 0.001 0.001 0.004 0.001 0.025 0.950 0.001 0.001 0.001 0.003 0.017 0.001 0.001 55 H 0.001 0.001 0.021 0.001 0.080 0.700 0.001 0.001 0.001 0.016 0.180 0.001 0.001 56 E 0.001 0.005 0.036 0.001 0.114 0.363 0.001 0.001 0.001 0.019 0.459 0.001 0.002 57 L 0.001 0.016 0.273 0.001 0.032 0.285 0.001 0.001 0.010 0.251 0.123 0.003 0.006 58 E 0.001 0.005 0.798 0.001 0.005 0.037 0.001 0.001 0.005 0.120 0.025 0.002 0.003 59 P 0.001 0.010 0.234 0.003 0.154 0.333 0.001 0.001 0.008 0.083 0.168 0.002 0.005 60 K 0.001 0.006 0.088 0.003 0.204 0.365 0.001 0.001 0.007 0.073 0.249 0.002 0.002 61 T 0.001 0.007 0.134 0.002 0.262 0.328 0.001 0.002 0.012 0.067 0.172 0.003 0.009 62 A 0.004 0.022 0.287 0.009 0.157 0.258 0.002 0.002 0.029 0.084 0.114 0.010 0.024 63 Q 0.010 0.025 0.267 0.013 0.091 0.171 0.004 0.004 0.048 0.150 0.132 0.053 0.032 64 T 0.010 0.028 0.267 0.015 0.064 0.160 0.005 0.006 0.044 0.137 0.151 0.008 0.104 65 G 0.007 0.011 0.376 0.013 0.016 0.089 0.002 0.004 0.037 0.261 0.068 0.102 0.014 66 P 0.011 0.016 0.400 0.009 0.041 0.185 0.005 0.006 0.042 0.081 0.079 0.015 0.110 67 A 0.018 0.024 0.206 0.011 0.101 0.333 0.008 0.011 0.049 0.065 0.070 0.064 0.040 68 I 0.018 0.015 0.161 0.012 0.081 0.418 0.008 0.007 0.030 0.078 0.082 0.023 0.066 69 R 0.006 0.020 0.151 0.005 0.044 0.414 0.002 0.001 0.010 0.082 0.220 0.020 0.025 70 Y 0.004 0.019 0.198 0.006 0.040 0.311 0.001 0.001 0.007 0.146 0.230 0.013 0.023 71 D 0.002 0.009 0.275 0.003 0.039 0.437 0.001 0.001 0.004 0.132 0.073 0.009 0.016 72 E 0.001 0.002 0.035 0.001 0.050 0.789 0.001 0.001 0.001 0.032 0.084 0.001 0.004 73 N 0.001 0.002 0.017 0.001 0.040 0.851 0.001 0.001 0.001 0.019 0.064 0.002 0.002 74 V 0.001 0.002 0.017 0.001 0.042 0.904 0.001 0.001 0.001 0.010 0.016 0.001 0.005 75 I 0.001 0.001 0.004 0.001 0.014 0.968 0.001 0.001 0.001 0.002 0.007 0.001 0.001 76 G 0.001 0.001 0.001 0.001 0.010 0.975 0.001 0.001 0.001 0.001 0.011 0.001 0.001 77 N 0.001 0.001 0.002 0.001 0.008 0.972 0.001 0.001 0.001 0.001 0.016 0.001 0.001 78 H 0.001 0.001 0.001 0.001 0.006 0.989 0.001 0.001 0.001 0.001 0.002 0.001 0.001 79 L 0.001 0.001 0.001 0.001 0.004 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 R 0.001 0.001 0.001 0.001 0.022 0.956 0.001 0.001 0.001 0.001 0.019 0.001 0.001 81 M 0.001 0.001 0.002 0.001 0.035 0.878 0.001 0.001 0.001 0.002 0.083 0.001 0.001 82 L 0.001 0.001 0.007 0.001 0.041 0.848 0.001 0.001 0.001 0.006 0.097 0.001 0.001 83 A 0.001 0.002 0.027 0.001 0.067 0.573 0.001 0.001 0.001 0.019 0.311 0.001 0.001 84 D 0.001 0.012 0.037 0.001 0.060 0.467 0.001 0.001 0.001 0.120 0.301 0.001 0.002 85 D 0.001 0.004 0.519 0.001 0.006 0.214 0.001 0.001 0.001 0.232 0.023 0.001 0.001 86 P 0.001 0.001 0.028 0.001 0.118 0.751 0.001 0.001 0.001 0.007 0.094 0.001 0.001 87 A 0.001 0.001 0.008 0.001 0.101 0.720 0.001 0.001 0.001 0.005 0.165 0.001 0.001 88 M 0.001 0.001 0.005 0.001 0.033 0.956 0.001 0.001 0.001 0.002 0.004 0.001 0.001 89 Q 0.001 0.001 0.001 0.001 0.004 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 R 0.001 0.001 0.001 0.001 0.003 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 91 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 96 S 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 97 R 0.001 0.001 0.002 0.001 0.013 0.962 0.001 0.001 0.001 0.002 0.019 0.001 0.001 98 S 0.001 0.001 0.005 0.001 0.017 0.923 0.001 0.001 0.001 0.006 0.047 0.001 0.001 99 I 0.001 0.001 0.014 0.001 0.020 0.851 0.001 0.001 0.001 0.012 0.097 0.001 0.002 100 H 0.001 0.002 0.076 0.002 0.021 0.605 0.001 0.001 0.002 0.040 0.242 0.005 0.002 101 E 0.002 0.011 0.240 0.002 0.028 0.293 0.001 0.001 0.006 0.085 0.315 0.007 0.011 102 R 0.001 0.026 0.703 0.001 0.005 0.040 0.001 0.001 0.016 0.156 0.028 0.009 0.016 103 Q 0.001 0.005 0.923 0.001 0.001 0.002 0.001 0.001 0.009 0.050 0.002 0.004 0.004