# TARGET T0393 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0393.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 25.1116 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.116 0.031 0.175 0.593 0.002 0.012 0.007 0.002 0.007 0.005 0.006 0.015 0.008 0.001 0.002 0.019 2 D 0.043 0.036 0.269 0.433 0.009 0.176 0.003 0.001 0.003 0.002 0.003 0.005 0.007 0.001 0.001 0.008 3 A 0.007 0.092 0.066 0.772 0.003 0.021 0.001 0.005 0.001 0.001 0.025 0.002 0.003 0.001 0.001 0.001 4 D 0.001 0.002 0.001 0.005 0.001 0.973 0.001 0.001 0.001 0.001 0.002 0.012 0.002 0.001 0.001 0.001 5 S 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.987 0.001 0.005 0.001 0.001 0.001 6 E 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.973 0.005 0.001 0.001 0.001 7 Q 0.004 0.004 0.048 0.006 0.001 0.004 0.007 0.001 0.002 0.001 0.006 0.019 0.766 0.003 0.022 0.107 8 R 0.011 0.003 0.140 0.006 0.001 0.019 0.010 0.001 0.001 0.001 0.023 0.017 0.740 0.001 0.003 0.025 9 K 0.004 0.015 0.018 0.007 0.001 0.024 0.002 0.001 0.001 0.001 0.040 0.034 0.849 0.001 0.001 0.004 10 S 0.003 0.015 0.010 0.031 0.001 0.022 0.004 0.001 0.001 0.001 0.019 0.072 0.812 0.002 0.001 0.008 11 L 0.001 0.006 0.019 0.020 0.001 0.011 0.001 0.001 0.001 0.001 0.007 0.036 0.897 0.001 0.001 0.001 12 H 0.001 0.003 0.005 0.007 0.001 0.032 0.001 0.001 0.001 0.001 0.015 0.014 0.921 0.001 0.001 0.002 13 L 0.001 0.003 0.001 0.007 0.001 0.011 0.001 0.001 0.001 0.001 0.046 0.031 0.900 0.001 0.001 0.001 14 A 0.001 0.004 0.002 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.004 0.065 0.912 0.001 0.001 0.001 15 A 0.001 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.986 0.001 0.001 0.001 16 V 0.001 0.001 0.001 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.984 0.001 0.001 0.001 17 F 0.001 0.004 0.001 0.024 0.001 0.007 0.004 0.001 0.001 0.001 0.001 0.003 0.953 0.001 0.001 0.002 18 T 0.001 0.005 0.003 0.014 0.010 0.014 0.018 0.001 0.001 0.001 0.003 0.004 0.878 0.029 0.005 0.016 19 C 0.001 0.003 0.003 0.003 0.001 0.020 0.003 0.007 0.001 0.001 0.019 0.010 0.886 0.006 0.029 0.008 20 N 0.002 0.004 0.002 0.002 0.001 0.005 0.001 0.001 0.002 0.003 0.085 0.042 0.825 0.001 0.005 0.022 21 F 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.132 0.821 0.001 0.001 0.003 22 T 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.009 0.041 0.946 0.001 0.001 0.001 23 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.019 0.978 0.001 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.985 0.001 0.001 0.001 25 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.997 0.001 0.001 0.001 26 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 29 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 30 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 31 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 32 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 34 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.002 35 K 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.008 0.986 0.001 0.003 36 Y 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.979 0.001 37 N 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.001 0.001 0.014 0.001 0.001 0.970 38 L 0.974 0.002 0.006 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.006 0.001 0.001 0.002 39 P 0.009 0.059 0.315 0.016 0.002 0.449 0.006 0.006 0.001 0.002 0.014 0.022 0.084 0.002 0.007 0.006 40 F 0.003 0.020 0.010 0.033 0.001 0.127 0.001 0.005 0.002 0.003 0.644 0.033 0.114 0.001 0.002 0.003 41 D 0.003 0.033 0.005 0.015 0.001 0.015 0.001 0.001 0.001 0.001 0.038 0.818 0.069 0.001 0.001 0.001 42 V 0.003 0.003 0.022 0.022 0.001 0.023 0.002 0.001 0.001 0.001 0.070 0.082 0.766 0.001 0.001 0.005 43 M 0.001 0.008 0.032 0.012 0.001 0.008 0.001 0.001 0.001 0.001 0.015 0.095 0.826 0.001 0.001 0.001 44 L 0.001 0.001 0.001 0.004 0.001 0.009 0.001 0.001 0.001 0.001 0.009 0.010 0.964 0.001 0.001 0.001 45 P 0.001 0.001 0.001 0.002 0.001 0.007 0.001 0.001 0.001 0.001 0.013 0.021 0.955 0.001 0.001 0.001 46 L 0.001 0.002 0.001 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.005 0.040 0.941 0.001 0.001 0.004 47 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.009 0.985 0.001 0.001 0.001 48 D 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.002 0.990 0.001 0.001 0.001 49 E 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.007 0.979 0.001 0.001 0.001 50 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.984 0.001 0.001 0.003 51 A 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.005 0.001 0.965 0.023 0.001 0.001 52 R 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.020 0.919 0.001 0.052 0.002 53 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.831 0.023 0.001 0.140 54 V 0.006 0.001 0.018 0.001 0.001 0.001 0.014 0.001 0.001 0.001 0.003 0.002 0.937 0.007 0.008 0.004 55 H 0.001 0.004 0.022 0.001 0.001 0.002 0.009 0.001 0.001 0.001 0.004 0.006 0.909 0.010 0.009 0.021 56 E 0.011 0.005 0.017 0.008 0.004 0.008 0.078 0.001 0.003 0.001 0.004 0.004 0.353 0.376 0.015 0.111 57 L 0.010 0.049 0.345 0.028 0.001 0.002 0.013 0.012 0.001 0.001 0.007 0.004 0.150 0.004 0.322 0.052 58 E 0.014 0.011 0.119 0.019 0.003 0.257 0.030 0.002 0.005 0.028 0.010 0.021 0.341 0.004 0.005 0.132 59 P 0.060 0.017 0.014 0.006 0.001 0.141 0.004 0.005 0.001 0.001 0.526 0.020 0.197 0.003 0.002 0.003 60 K 0.002 0.384 0.018 0.018 0.001 0.007 0.002 0.003 0.004 0.001 0.029 0.462 0.059 0.003 0.005 0.003 61 T 0.011 0.017 0.089 0.090 0.002 0.023 0.022 0.002 0.004 0.001 0.009 0.053 0.611 0.004 0.031 0.032 62 A 0.011 0.011 0.530 0.051 0.004 0.020 0.020 0.002 0.002 0.001 0.030 0.008 0.260 0.005 0.004 0.042 63 Q 0.029 0.059 0.155 0.208 0.032 0.056 0.058 0.022 0.003 0.003 0.034 0.041 0.225 0.043 0.009 0.023 64 T 0.013 0.093 0.142 0.413 0.003 0.038 0.007 0.031 0.012 0.004 0.008 0.016 0.155 0.002 0.033 0.029 65 G 0.023 0.028 0.105 0.403 0.005 0.105 0.009 0.004 0.017 0.023 0.036 0.016 0.165 0.003 0.003 0.054 66 P 0.060 0.031 0.091 0.240 0.008 0.175 0.004 0.010 0.001 0.001 0.145 0.056 0.169 0.002 0.003 0.005 67 A 0.006 0.092 0.048 0.197 0.012 0.112 0.006 0.007 0.004 0.002 0.144 0.135 0.216 0.007 0.002 0.010 68 I 0.008 0.049 0.036 0.103 0.093 0.053 0.156 0.005 0.003 0.001 0.033 0.108 0.211 0.120 0.010 0.010 69 R 0.005 0.037 0.069 0.066 0.003 0.044 0.014 0.115 0.003 0.003 0.052 0.019 0.298 0.003 0.242 0.027 70 Y 0.011 0.047 0.046 0.037 0.001 0.025 0.005 0.007 0.058 0.097 0.046 0.078 0.228 0.004 0.004 0.306 71 D 0.059 0.003 0.005 0.002 0.002 0.306 0.007 0.001 0.001 0.002 0.052 0.099 0.456 0.002 0.001 0.001 72 E 0.001 0.011 0.009 0.001 0.001 0.009 0.001 0.003 0.001 0.001 0.473 0.081 0.407 0.001 0.003 0.001 73 N 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.019 0.568 0.403 0.001 0.001 0.001 74 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.010 0.973 0.001 0.001 0.001 75 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.976 0.001 0.001 0.001 76 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.995 0.001 0.001 0.001 77 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 78 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 79 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 80 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 81 M 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.968 0.016 0.002 0.011 82 L 0.001 0.001 0.009 0.001 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.001 0.880 0.041 0.025 0.016 83 A 0.001 0.003 0.018 0.001 0.001 0.002 0.012 0.001 0.001 0.001 0.002 0.001 0.796 0.016 0.042 0.104 84 D 0.025 0.031 0.073 0.011 0.001 0.002 0.007 0.002 0.002 0.001 0.007 0.006 0.425 0.023 0.031 0.354 85 D 0.011 0.001 0.021 0.001 0.001 0.330 0.008 0.001 0.001 0.001 0.008 0.016 0.592 0.001 0.006 0.004 86 P 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.866 0.007 0.119 0.001 0.001 0.001 87 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.941 0.053 0.001 0.001 0.001 88 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.007 0.987 0.001 0.001 0.001 89 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.015 0.982 0.001 0.001 0.001 90 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 91 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.993 0.001 0.001 0.001 92 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 93 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 94 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 95 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 96 S 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 97 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.986 0.002 0.002 0.004 98 S 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.980 0.003 0.002 0.005 99 I 0.001 0.001 0.013 0.001 0.001 0.001 0.017 0.001 0.001 0.001 0.003 0.001 0.920 0.020 0.005 0.016 100 H 0.001 0.017 0.031 0.015 0.001 0.003 0.022 0.002 0.001 0.001 0.003 0.011 0.833 0.011 0.026 0.023 101 E 0.011 0.011 0.090 0.042 0.008 0.012 0.049 0.004 0.005 0.003 0.005 0.005 0.475 0.090 0.019 0.172 102 R 0.026 0.021 0.114 0.034 0.070 0.033 0.217 0.009 0.002 0.003 0.030 0.008 0.240 0.114 0.042 0.036 103 Q 0.014 0.100 0.105 0.046 0.045 0.040 0.089 0.102 0.006 0.006 0.062 0.030 0.131 0.069 0.111 0.046