# TARGET T0393 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0393.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 25.1116 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.034 0.572 0.187 0.040 0.073 0.029 0.028 0.004 0.030 0.002 0.001 2 D 0.041 0.338 0.432 0.025 0.023 0.080 0.010 0.001 0.046 0.001 0.003 3 A 0.083 0.326 0.455 0.041 0.028 0.042 0.002 0.001 0.021 0.001 0.001 4 D 0.104 0.121 0.504 0.052 0.048 0.093 0.008 0.001 0.062 0.005 0.002 5 S 0.895 0.009 0.059 0.020 0.004 0.006 0.001 0.001 0.001 0.002 0.002 6 E 0.891 0.009 0.013 0.062 0.006 0.005 0.009 0.002 0.002 0.001 0.001 7 Q 0.752 0.027 0.023 0.150 0.011 0.009 0.019 0.002 0.006 0.001 0.001 8 R 0.865 0.036 0.059 0.016 0.005 0.009 0.004 0.001 0.005 0.001 0.001 9 K 0.949 0.006 0.012 0.011 0.001 0.019 0.001 0.001 0.002 0.001 0.001 10 S 0.923 0.010 0.006 0.049 0.003 0.005 0.002 0.001 0.002 0.001 0.001 11 L 0.904 0.022 0.011 0.046 0.010 0.003 0.002 0.001 0.001 0.001 0.001 12 H 0.941 0.017 0.015 0.009 0.003 0.010 0.001 0.001 0.003 0.001 0.001 13 L 0.982 0.003 0.002 0.009 0.001 0.002 0.001 0.001 0.001 0.001 0.001 14 A 0.984 0.005 0.002 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 15 A 0.985 0.005 0.002 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 16 V 0.969 0.017 0.003 0.004 0.001 0.003 0.001 0.001 0.002 0.001 0.001 17 F 0.954 0.015 0.003 0.012 0.002 0.012 0.001 0.001 0.002 0.001 0.001 18 T 0.860 0.020 0.003 0.073 0.004 0.033 0.003 0.001 0.005 0.001 0.001 19 C 0.783 0.014 0.005 0.177 0.006 0.004 0.009 0.001 0.001 0.001 0.001 20 N 0.573 0.006 0.009 0.276 0.012 0.011 0.105 0.004 0.002 0.001 0.001 21 F 0.783 0.015 0.016 0.130 0.008 0.012 0.031 0.002 0.003 0.001 0.001 22 T 0.955 0.007 0.008 0.024 0.001 0.003 0.001 0.001 0.001 0.001 0.001 23 N 0.979 0.002 0.003 0.012 0.001 0.003 0.001 0.001 0.001 0.001 0.001 24 H 0.991 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 M 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 K 0.980 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 K 0.913 0.001 0.001 0.081 0.001 0.001 0.002 0.001 0.001 0.001 0.001 36 Y 0.145 0.002 0.011 0.812 0.001 0.001 0.027 0.001 0.001 0.001 0.001 37 N 0.012 0.002 0.004 0.097 0.003 0.004 0.818 0.057 0.001 0.003 0.001 38 L 0.007 0.234 0.715 0.007 0.004 0.006 0.001 0.001 0.025 0.001 0.001 39 P 0.286 0.003 0.576 0.023 0.002 0.069 0.002 0.001 0.002 0.001 0.037 40 F 0.725 0.070 0.086 0.035 0.041 0.015 0.007 0.003 0.012 0.005 0.001 41 D 0.908 0.010 0.035 0.018 0.004 0.017 0.002 0.001 0.003 0.001 0.002 42 V 0.870 0.031 0.027 0.042 0.006 0.021 0.001 0.001 0.003 0.001 0.001 43 M 0.876 0.027 0.037 0.036 0.006 0.011 0.001 0.001 0.005 0.001 0.001 44 L 0.889 0.012 0.048 0.005 0.004 0.008 0.001 0.001 0.031 0.001 0.001 45 P 0.962 0.001 0.026 0.007 0.001 0.003 0.001 0.001 0.001 0.001 0.001 46 L 0.854 0.007 0.026 0.092 0.001 0.016 0.001 0.001 0.002 0.001 0.001 47 I 0.954 0.012 0.016 0.009 0.002 0.003 0.001 0.001 0.003 0.001 0.001 48 D 0.969 0.002 0.009 0.014 0.001 0.004 0.001 0.001 0.001 0.001 0.001 49 E 0.931 0.002 0.007 0.051 0.001 0.006 0.001 0.001 0.001 0.001 0.001 50 T 0.832 0.015 0.021 0.118 0.004 0.006 0.001 0.001 0.004 0.001 0.001 51 A 0.984 0.001 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 R 0.983 0.002 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.918 0.003 0.005 0.068 0.001 0.003 0.002 0.001 0.001 0.001 0.001 54 V 0.871 0.016 0.065 0.039 0.001 0.003 0.001 0.001 0.004 0.001 0.001 55 H 0.921 0.009 0.021 0.027 0.002 0.009 0.008 0.001 0.002 0.001 0.001 56 E 0.679 0.034 0.036 0.195 0.009 0.021 0.016 0.002 0.007 0.001 0.001 57 L 0.425 0.029 0.090 0.415 0.005 0.016 0.010 0.001 0.006 0.001 0.001 58 E 0.063 0.109 0.279 0.011 0.077 0.034 0.035 0.005 0.378 0.009 0.001 59 P 0.544 0.002 0.405 0.011 0.001 0.013 0.001 0.001 0.001 0.001 0.022 60 K 0.822 0.026 0.050 0.073 0.007 0.012 0.003 0.002 0.003 0.001 0.001 61 T 0.526 0.077 0.076 0.221 0.030 0.028 0.020 0.002 0.017 0.001 0.001 62 A 0.401 0.094 0.159 0.135 0.052 0.026 0.080 0.016 0.023 0.013 0.001 63 Q 0.383 0.111 0.252 0.175 0.010 0.045 0.008 0.001 0.012 0.001 0.001 64 T 0.153 0.223 0.165 0.334 0.058 0.026 0.015 0.001 0.022 0.003 0.001 65 G 0.023 0.106 0.209 0.004 0.486 0.005 0.011 0.010 0.034 0.112 0.001 66 P 0.157 0.006 0.783 0.008 0.003 0.016 0.002 0.001 0.002 0.001 0.023 67 A 0.251 0.262 0.336 0.066 0.029 0.031 0.005 0.004 0.013 0.001 0.001 68 I 0.172 0.475 0.217 0.057 0.034 0.030 0.002 0.001 0.012 0.001 0.001 69 R 0.213 0.333 0.197 0.111 0.074 0.034 0.014 0.002 0.019 0.002 0.001 70 Y 0.277 0.142 0.111 0.232 0.084 0.063 0.041 0.017 0.023 0.009 0.001 71 D 0.191 0.098 0.216 0.140 0.036 0.141 0.067 0.006 0.098 0.006 0.001 72 E 0.944 0.004 0.027 0.017 0.001 0.003 0.002 0.001 0.001 0.001 0.001 73 N 0.886 0.011 0.018 0.046 0.008 0.008 0.014 0.005 0.004 0.001 0.001 74 V 0.820 0.038 0.058 0.048 0.005 0.025 0.002 0.001 0.004 0.001 0.001 75 I 0.948 0.015 0.014 0.009 0.001 0.010 0.001 0.001 0.003 0.001 0.001 76 G 0.982 0.002 0.004 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 77 N 0.948 0.001 0.003 0.039 0.002 0.004 0.002 0.001 0.001 0.001 0.001 78 H 0.911 0.009 0.007 0.057 0.003 0.005 0.004 0.001 0.003 0.001 0.001 79 L 0.989 0.002 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 R 0.981 0.001 0.004 0.010 0.001 0.003 0.001 0.001 0.001 0.001 0.001 81 M 0.953 0.002 0.004 0.037 0.001 0.002 0.001 0.001 0.001 0.001 0.001 82 L 0.886 0.011 0.023 0.066 0.002 0.004 0.002 0.001 0.005 0.001 0.001 83 A 0.897 0.006 0.031 0.048 0.003 0.005 0.008 0.001 0.001 0.001 0.001 84 D 0.586 0.018 0.030 0.332 0.005 0.012 0.008 0.004 0.005 0.001 0.001 85 D 0.130 0.058 0.255 0.102 0.016 0.052 0.026 0.001 0.359 0.001 0.001 86 P 0.971 0.001 0.023 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 A 0.965 0.002 0.003 0.026 0.001 0.002 0.001 0.001 0.001 0.001 0.001 88 M 0.957 0.002 0.005 0.031 0.001 0.002 0.001 0.001 0.001 0.001 0.001 89 Q 0.995 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 R 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 L 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 L 0.937 0.001 0.001 0.060 0.001 0.002 0.001 0.001 0.001 0.001 0.001 96 S 0.918 0.002 0.003 0.065 0.002 0.001 0.008 0.001 0.001 0.001 0.001 97 R 0.967 0.002 0.005 0.021 0.001 0.002 0.002 0.001 0.001 0.001 0.001 98 S 0.944 0.003 0.005 0.042 0.001 0.003 0.001 0.001 0.001 0.001 0.001 99 I 0.863 0.013 0.020 0.096 0.002 0.004 0.001 0.001 0.002 0.001 0.001 100 H 0.800 0.035 0.053 0.071 0.008 0.012 0.014 0.001 0.006 0.001 0.001 101 E 0.595 0.072 0.088 0.168 0.018 0.024 0.022 0.004 0.008 0.001 0.001 102 R 0.365 0.095 0.203 0.252 0.013 0.028 0.022 0.003 0.018 0.001 0.001 103 Q 0.280 0.105 0.176 0.199 0.038 0.043 0.107 0.020 0.026 0.006 0.001