# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	0.4196		
1yrlA	491	0.7658		
1np3A	338	2.839	a.100.1.2,c.2.1.6	85946,85947
2ahrA	259	2.906	a.100.1.10,c.2.1.6	126775,126776
1ybdA	239	4.430	c.73.1.3	122884
2a4dA	160	4.702	d.20.1.1	126152
2uytA	489	4.780		
1wdyA	285	9.568	d.211.1.1	114541
2f0xA	148	9.665	d.38.1.5	132673
1khyA	148	9.779	a.174.1.1	77410
1qmgA	524	10.17	a.100.1.2,c.2.1.6	18785,30182
2co5A	99	10.68		
1qq9A	284	11.79	c.56.5.4	33841
2bneA	241	15.43	c.73.1.3	128824
1yhlA	362	17.14		
1n0qA	93	19.70	k.37.1.1	79754
2zcoA	293	23.58		
2odiA	238	23.68		
2qf2A	624	23.80		
1zv1A	65	24.23		
1kvkA	395	25.17	d.14.1.5,d.58.26.3	73060,73061
1pprM	312	31.05	a.131.1.1,a.131.1.1	19502,19503
2gifA	1057	32.75		
1uohA	226	35.55	d.211.1.1	99690
2akoA	251	35.56	c.73.1.3	126923
2o37A	92	39.41		
1aba	87	41.10		
2gwdA	449	43.14		
1r59O	505	45.84	c.55.1.4,c.55.1.4	111697,111698
2e8vA	340	47.54		
2dznA	228	47.97		
2o8nA	265	48.40		
2qisA	374	55.39		
2ogxB	270	55.74		
2bkmA	128	60.97		
1iynA	295	61.38	a.93.1.1	90722
1ji6A	589	61.81	b.18.1.3,b.77.2.1,f.1.3.1	63066,63067,63068
1qgiA	259	68.29	d.2.1.7	37001
1cxqA	162	69.19	c.55.3.2	33621
2izzA	322	71.31		
1zn6A	227	72.12	d.303.1.1	125373
1l7vA	326	73.55	f.22.1.1	73672
1nh2B	53	74.83	a.32.1.1	91874
2v0hA	456	75.51		
1y8qA	346	75.63		
1j5wA	298	75.80	d.104.1.1	71589
1abaA	87	77.06	c.47.1.1	32760
1yb4A	295	77.31		
2vbaA	406	77.44		
1j3nA	408	77.46	c.95.1.1,c.95.1.1	84074,84075
2a1fA	247	77.60	c.73.1.3	125991
1vpdA	299	78.45	a.100.1.1,c.2.1.6	113951,113952
1gp8A	40	78.73	j.58.1.1	46342
1bg6	359	79.43		
1j98A	157	84.42	d.185.1.2	62755
2j9uA	96	84.70	a.24.28.1	138155
1ustA	93	85.89	a.4.5.13	99884
2ij2A	470	88.41	a.104.1.1	137449