# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	0.1406		
1yrlA	491	0.5900		
1np3A	338	2.863	a.100.1.2,c.2.1.6	85946,85947
2ahrA	259	3.858	a.100.1.10,c.2.1.6	126775,126776
2uytA	489	4.751		
2a4dA	160	6.173	d.20.1.1	126152
1r59O	505	6.586	c.55.1.4,c.55.1.4	111697,111698
1ybdA	239	7.247	c.73.1.3	122884
2f0xA	148	8.667	d.38.1.5	132673
1qmgA	524	9.97	a.100.1.2,c.2.1.6	18785,30182
1yhlA	362	10.30		
2gwdA	449	11.31		
1wdyA	285	14.32	d.211.1.1	114541
2co5A	99	20.26		
1uohA	226	20.80	d.211.1.1	99690
1n0qA	93	21.62	k.37.1.1	79754
1l7vA	326	22.57	f.22.1.1	73672
1pprM	312	24.33	a.131.1.1,a.131.1.1	19502,19503
1khyA	148	30.19	a.174.1.1	77410
1qgiA	259	32.00	d.2.1.7	37001
1kvkA	395	34.19	d.14.1.5,d.58.26.3	73060,73061
2bneA	241	34.77	c.73.1.3	128824
2gifA	1057	35.63		
2odiA	238	35.79		
1zv1A	65	36.78		
2akoA	251	38.25	c.73.1.3	126923
1sdjA	310	38.29	d.21.1.2,d.21.1.2	98807,98808
2qf2A	624	38.78		
1aipC	196	39.41	a.5.2.2,d.43.1.1	58930,58931
1ji6A	589	43.86	b.18.1.3,b.77.2.1,f.1.3.1	63066,63067,63068
1qq9A	284	47.31	c.56.5.4	33841
2bkmA	128	49.89		
1iynA	295	50.28	a.93.1.1	90722
1cxqA	162	51.37	c.55.3.2	33621
2qisA	374	51.44		
1aba	87	53.86		
2o37A	92	56.50		
2ij2A	470	57.31	a.104.1.1	137449
1iowA	306	58.40	c.30.1.2,d.142.1.1	31713,41481
2dznA	228	58.53		
1q5dA	419	59.38	a.104.1.1	95891
1ustA	93	60.35	a.4.5.13	99884
1y8qA	346	60.89		
2ihiA	395	61.76		
2o8nA	265	62.49		
1oy3D	282	63.50	d.211.1.1	87554
1pea	385	65.04		
1bu6O	501	68.78	c.55.1.4,c.55.1.4	33499,33500
2ogxB	270	68.82		
1gp8A	40	72.59	j.58.1.1	46342
2jabA	136	76.68		
2e8vA	340	77.31		
1ev7A	317	77.53	c.52.1.9	33315
1jpzA	473	79.28	a.104.1.1	67069
2zcoA	293	80.87		
2graA	277	80.91		
2j1oA	268	83.74		
2pg3A	232	83.77		
1x0vA	354	85.10		
2k29A	53	86.22		
2g3kA	94	89.41	a.24.28.1	134562
3bwuD	125	89.51		
2rkhA	180	89.58		
1peaA	385	89.79	c.93.1.1	35662