# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i76A 276 0.1201 1yrlA 491 0.3813 2ahrA 259 2.352 a.100.1.10,c.2.1.6 126775,126776 1np3A 338 3.025 a.100.1.2,c.2.1.6 85946,85947 1qmgA 524 3.732 a.100.1.2,c.2.1.6 18785,30182 2uytA 489 3.853 1wdyA 285 4.640 d.211.1.1 114541 1khyA 148 4.990 a.174.1.1 77410 2co5A 99 8.068 1ybdA 239 11.95 c.73.1.3 122884 1qq9A 284 13.54 c.56.5.4 33841 2odiA 238 14.88 1pk1B 89 15.57 a.60.1.2 118712 2a4dA 160 17.77 d.20.1.1 126152 2gifA 1057 17.97 2e8vA 340 19.09 1l7vA 326 21.33 f.22.1.1 73672 2akoA 251 21.74 c.73.1.3 126923 1zv1A 65 22.24 1r59O 505 22.84 c.55.1.4,c.55.1.4 111697,111698 1nthA 458 23.88 c.1.25.1 80730 2bneA 241 24.26 c.73.1.3 128824 1cxqA 162 26.92 c.55.3.2 33621 1kvkA 395 27.24 d.14.1.5,d.58.26.3 73060,73061 1x0vA 354 27.44 1yqhA 109 29.02 d.58.48.1 123886 2k29A 53 29.75 1n0qA 93 30.43 k.37.1.1 79754 1yb4A 295 33.15 2nq2A 337 33.87 1u11A 182 34.14 c.23.8.1 107576 1qczA 169 34.99 c.23.8.1 31276 1qgiA 259 35.86 d.2.1.7 37001 1y8qA 346 38.01 1xfrA 128 40.48 1vpdA 299 41.32 a.100.1.1,c.2.1.6 113951,113952 1yhlA 362 41.39 2graA 277 43.25 2ozlB 341 43.33 c.36.1.7,c.48.1.2 139447,139448 1uohA 226 43.93 d.211.1.1 99690 1u55A 188 47.41 d.278.1.1 107677 1aipC 196 47.41 a.5.2.2,d.43.1.1 58930,58931 2v0hA 456 48.05 2bf5A 98 52.08 d.137.1.1 128405 1bu6O 501 53.24 c.55.1.4,c.55.1.4 33499,33500 2pg3A 232 53.29 2v9yA 334 54.16 1kufA 203 56.79 d.92.1.9 73007 1w85B 324 56.82 c.36.1.7,c.48.1.2 114336,114337 1ybhA 590 59.23 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2zcoA 293 59.27 1j3nA 408 59.68 c.95.1.1,c.95.1.1 84074,84075 2bkmA 128 62.67 2gj4A 824 62.73 c.87.1.4 135256 2rcyA 262 63.39 2izzA 322 63.58 2h78A 302 64.68 2f0xA 148 64.86 d.38.1.5 132673 1ustA 93 65.07 a.4.5.13 99884 1evlA 401 65.46 c.51.1.1,d.104.1.1 33202,40751 2gwdA 449 66.39 1iowA 306 73.33 c.30.1.2,d.142.1.1 31713,41481 2bv6A 142 74.63 1pprM 312 76.10 a.131.1.1,a.131.1.1 19502,19503 1tujA 123 76.81 1vjoA 393 77.55 c.67.1.3 100827 1umdB 324 77.72 c.36.1.7,c.48.1.2 99600,99601 1tyoA 435 80.32 2ij2A 470 80.61 a.104.1.1 137449 2dznA 228 80.75 2o37A 92 81.12 2qgsA 225 82.68 1pea 385 83.63 2e18A 257 85.13 1ji6A 589 85.57 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1e1oA 504 86.04 b.40.4.1,d.104.1.1 25258,40714 1q5dA 419 86.66 a.104.1.1 95891 1yp1A 202 87.35 1k6kA 143 88.55 a.174.1.1 77274 1yqgA 263 88.63 2af4C 333 89.11 c.77.1.5 126656