# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ybdA	239	5.646	c.73.1.3	122884
2ahrA	259	5.998	a.100.1.10,c.2.1.6	126775,126776
2bneA	241	7.021	c.73.1.3	128824
1yrlA	491	7.800		
1np3A	338	8.060	a.100.1.2,c.2.1.6	85946,85947
2i76A	276	8.795		
2qf2A	624	9.858		
2uytA	489	12.11		
1qq9A	284	12.84	c.56.5.4	33841
1wdyA	285	13.13	d.211.1.1	114541
2a4dA	160	15.83	d.20.1.1	126152
1e4yA	214	21.80	c.37.1.1,g.41.2.1	31901,45181
1yhlA	362	21.95		
1khyA	148	22.84	a.174.1.1	77410
1n0qA	93	26.85	k.37.1.1	79754
2ooxA	137	30.60		
1iynA	295	34.85	a.93.1.1	90722
2f0xA	148	37.00	d.38.1.5	132673
2co5A	99	43.50		
2ogxB	270	45.95		
1ustA	93	46.78	a.4.5.13	99884
2odiA	238	48.26		
1zn6A	227	49.62	d.303.1.1	125373
1cxqA	162	49.73	c.55.3.2	33621
2etbA	256	52.16		
1kvkA	395	53.70	d.14.1.5,d.58.26.3	73060,73061
1uohA	226	55.22	d.211.1.1	99690
2a1fA	247	56.37	c.73.1.3	125991
2o37A	92	58.98		
1zv1A	65	59.42		
2dznA	228	61.96		
2ij2A	470	62.75	a.104.1.1	137449
1o8bA	219	62.85	c.124.1.4,d.58.40.1	81180,81181
2e8vA	340	65.04		
1aba	87	67.22		
1pprM	312	67.56	a.131.1.1,a.131.1.1	19502,19503
2gifA	1057	70.22		
2ozlB	341	73.84	c.36.1.7,c.48.1.2	139447,139448
2ywuA	181	76.47		
1umdB	324	80.07	c.36.1.7,c.48.1.2	99600,99601
1gp8A	40	82.33	j.58.1.1	46342
1vpdA	299	86.04	a.100.1.1,c.2.1.6	113951,113952
1qmgA	524	87.23	a.100.1.2,c.2.1.6	18785,30182
2bkmA	128	89.35