# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ybdA	239	3.751	c.73.1.3	122884
2bneA	241	6.228	c.73.1.3	128824
2uytA	489	7.591		
2ahrA	259	8.182	a.100.1.10,c.2.1.6	126775,126776
2a4dA	160	9.416	d.20.1.1	126152
2qf2A	624	10.78		
1np3A	338	11.86	a.100.1.2,c.2.1.6	85946,85947
1qq9A	284	12.35	c.56.5.4	33841
1khyA	148	14.21	a.174.1.1	77410
1wdyA	285	15.91	d.211.1.1	114541
1yrlA	491	17.31		
1yhlA	362	19.73		
2ooxA	137	20.74		
2i76A	276	24.06		
1e4yA	214	26.03	c.37.1.1,g.41.2.1	31901,45181
2f0xA	148	31.60	d.38.1.5	132673
2co5A	99	33.98		
1zn6A	227	36.11	d.303.1.1	125373
1n0qA	93	37.80	k.37.1.1	79754
2a1fA	247	39.19	c.73.1.3	125991
1iynA	295	39.56	a.93.1.1	90722
2odiA	238	39.83		
1ustA	93	41.70	a.4.5.13	99884
1kvkA	395	43.74	d.14.1.5,d.58.26.3	73060,73061
2ogxB	270	47.39		
2o37A	92	49.32		
1aba	87	50.56		
1cxqA	162	54.37	c.55.3.2	33621
2ij2A	470	54.81	a.104.1.1	137449
2dznA	228	56.19		
1zv1A	65	59.78		
2zcoA	293	61.25		
1uohA	226	62.27	d.211.1.1	99690
1pprM	312	63.88	a.131.1.1,a.131.1.1	19502,19503
2v0hA	456	68.64		
2ywuA	181	68.70		
2gifA	1057	68.92		
2e8vA	340	71.09		
1ltqA	301	72.95	c.108.1.9,c.37.1.1	78208,78209
1nthA	458	74.83	c.1.25.1	80730
1o8bA	219	75.25	c.124.1.4,d.58.40.1	81180,81181
2ii3A	262	85.87		
2etbA	256	86.09		
1abaA	87	87.15	c.47.1.1	32760
2qisA	374	87.76