# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a4dA	160	5.690	d.20.1.1	126152
2ahrA	259	9.148	a.100.1.10,c.2.1.6	126775,126776
2i76A	276	9.799		
1ybdA	239	9.96	c.73.1.3	122884
2uytA	489	10.28		
2bneA	241	12.33	c.73.1.3	128824
1yrlA	491	12.35		
1khyA	148	14.33	a.174.1.1	77410
2qf2A	624	17.04		
1yhlA	362	17.09		
1qq9A	284	17.35	c.56.5.4	33841
1wdyA	285	18.73	d.211.1.1	114541
1np3A	338	20.02	a.100.1.2,c.2.1.6	85946,85947
2f0xA	148	25.79	d.38.1.5	132673
1e4yA	214	29.30	c.37.1.1,g.41.2.1	31901,45181
2co5A	99	31.57		
1zn6A	227	36.12	d.303.1.1	125373
1iynA	295	39.07	a.93.1.1	90722
1kvkA	395	40.72	d.14.1.5,d.58.26.3	73060,73061
1ustA	93	43.23	a.4.5.13	99884
1n0qA	93	48.46	k.37.1.1	79754
2odiA	238	52.05		
2e8vA	340	52.40		
2ogxB	270	53.13		
2o37A	92	55.84		
2zcoA	293	57.49		
2gifA	1057	59.49		
1cxqA	162	62.04	c.55.3.2	33621
2qisA	374	67.73		
2ij2A	470	68.59	a.104.1.1	137449
1aba	87	70.56		
1nthA	458	72.33	c.1.25.1	80730
1pprM	312	73.94	a.131.1.1,a.131.1.1	19502,19503
2dznA	228	74.62		
2ywuA	181	75.29		
2v0hA	456	78.00		
2etbA	256	84.24		
1uohA	226	84.24	d.211.1.1	99690
2o8nA	265	84.60		
2ozlB	341	84.74	c.36.1.7,c.48.1.2	139447,139448
1j98A	157	85.79	d.185.1.2	62755