# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yrlA	491	2.310		
1lxjA	104	7.972	d.58.48.1	84736
1yqhA	109	8.581	d.58.48.1	123886
1g8kA	825	9.698	b.52.2.2,c.81.1.1	26920,35328
2i76A	276	11.31		
1qq9A	284	15.44	c.56.5.4	33841
1qczA	169	17.19	c.23.8.1	31276
1khyA	148	22.80	a.174.1.1	77410
2f0xA	148	23.86	d.38.1.5	132673
1o4vA	183	25.99	c.23.8.1	86628
2uytA	489	28.51		
1x0lA	333	28.60		
2d1cA	496	33.80		
1u11A	182	35.42	c.23.8.1	107576
2dvtA	327	35.49	c.1.9.15	131793
1cxqA	162	35.61	c.55.3.2	33621
1yhlA	362	37.02		
2co5A	99	38.20		
1m3kA	392	44.83	c.95.1.1,c.95.1.1	78565,78566
2dawA	154	49.29		
2g3kA	94	49.64	a.24.28.1	134562
2ihiA	395	49.67		
1pea	385	52.59		
1rj9A	304	54.77	a.24.13.1,c.37.1.10	97553,97554
1peaA	385	56.45	c.93.1.1	35662
2zcoA	293	56.89		
1i4jA	110	59.70	d.55.1.1	76734
2ywxA	157	62.20		
1vk9A	151	62.41	c.97.1.3	108640
1h05A	146	63.36	c.23.13.1	76433
1bg6	359	67.21		
1x0pA	143	68.42	d.58.10.2	121552
1qmgA	524	70.06	a.100.1.2,c.2.1.6	18785,30182
2j9uA	96	73.22	a.24.28.1	138155
1z82A	335	76.01		
2uzhA	165	76.75		
1yb4A	295	77.66		
2hfnA	153	80.65		
1o8bA	219	81.69	c.124.1.4,d.58.40.1	81180,81181
1vqoR	155	83.84	d.55.1.1	120379
1t0qA	498	86.20	a.25.1.2	106220
2g29A	417	87.88		
2bfdB	345	88.18	c.36.1.7,c.48.1.2	128419,128420