# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	1.243		
1yrlA	491	4.501		
1ybdA	239	7.001	c.73.1.3	122884
2ahrA	259	7.172	a.100.1.10,c.2.1.6	126775,126776
2uytA	489	7.666		
1wdyA	285	14.74	d.211.1.1	114541
1np3A	338	19.98	a.100.1.2,c.2.1.6	85946,85947
2f0xA	148	21.63	d.38.1.5	132673
2bneA	241	22.00	c.73.1.3	128824
2a4dA	160	22.87	d.20.1.1	126152
2co5A	99	24.36		
1kvkA	395	25.19	d.14.1.5,d.58.26.3	73060,73061
1n0qA	93	29.41	k.37.1.1	79754
1qq9A	284	29.97	c.56.5.4	33841
1iynA	295	29.98	a.93.1.1	90722
2j9uA	96	31.88	a.24.28.1	138155
2g3kA	94	32.97	a.24.28.1	134562
1qmgA	524	33.48	a.100.1.2,c.2.1.6	18785,30182
1uohA	226	33.83	d.211.1.1	99690
2e8vA	340	34.43		
2odiA	238	36.09		
2ooxA	137	43.63		
1ustA	93	44.16	a.4.5.13	99884
2gifA	1057	45.67		
1zv1A	65	46.62		
2zcoA	293	47.42		
2gwdA	449	49.18		
2dznA	228	51.19		
2ij2A	470	55.66	a.104.1.1	137449
1e1oA	504	56.62	b.40.4.1,d.104.1.1	25258,40714
2izzA	322	57.76		
1khyA	148	57.80	a.174.1.1	77410
1aba	87	60.58		
1vpdA	299	62.18	a.100.1.1,c.2.1.6	113951,113952
2qisA	374	63.92		
1ql0A	241	66.52	d.4.1.2	37139
2o8nA	265	67.30		
1pprM	312	70.02	a.131.1.1,a.131.1.1	19502,19503
2v0hA	456	72.53		
2k29A	53	74.69		
1yhlA	362	81.40		
2jabA	136	82.13		
1iowA	306	83.70	c.30.1.2,d.142.1.1	31713,41481
2ihiA	395	84.79		
1yb4A	295	86.53		
1qf8A	182	87.00	g.41.4.1	45212
2bf5A	98	87.34	d.137.1.1	128405
1zo4A	473	89.00		
1vmiA	355	89.45	c.77.1.5	113678
1gaiA	472	89.86	a.102.1.1	18819