# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wdyA	285	0.3145	d.211.1.1	114541
2o8nA	265	2.755		
2qf2A	624	2.949		
1n0qA	93	3.328	k.37.1.1	79754
1oy3D	282	4.036	d.211.1.1	87554
2a4dA	160	4.342	d.20.1.1	126152
1yrlA	491	4.474		
2i76A	276	7.735		
1eovA	487	8.952	b.40.4.1,d.104.1.1	25239,40760
1qmgA	524	10.21	a.100.1.2,c.2.1.6	18785,30182
2gwdA	449	11.34		
2qizA	982	11.38		
2ahrA	259	11.85	a.100.1.10,c.2.1.6	126775,126776
2ha9A	446	12.80		
1bd8	156	13.33		
2qm1A	326	14.04		
1yhlA	362	14.74		
3bq5A	766	16.92		
2zcoA	293	17.03		
2nq5A	755	19.37		
1uohA	226	25.26	d.211.1.1	99690
2i00A	406	29.04		
2jabA	136	29.77		
2pidA	356	30.11		
1rtqA	299	30.22	c.56.5.4	97819
2co5A	99	31.43		
1o6gA	710	31.98	b.69.7.1,c.69.1.4	81087,81088
1khyA	148	32.61	a.174.1.1	77410
1a8l	226	32.71		
1bd8A	156	33.11	d.211.1.1	19157
1w8gA	234	33.85		
1e6yC	247	34.84	d.58.31.1	39441
1qq9A	284	35.16	c.56.5.4	33841
1g0dA	695	35.75	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	60166,60167,60168,60169
2f42A	179	37.57		
1cc1L	498	37.64	e.18.1.1	43301
2e8vA	340	39.61		
2j9uA	96	39.70	a.24.28.1	138155
1dp4A	435	42.20	c.93.1.1	35710
1usgA	346	42.90	c.93.1.1	99864
1e4yA	214	43.06	c.37.1.1,g.41.2.1	31901,45181
2f8yA	223	43.49		
1lqsL	157	43.77	a.26.1.3	74192
2vbaA	406	44.74		
2g3kA	94	45.97	a.24.28.1	134562
1iowA	306	46.25	c.30.1.2,d.142.1.1	31713,41481
2dznA	228	48.17		
2p0tA	176	48.98		
2rfmA	192	49.14		
1zv1A	65	49.27		
2j1oA	268	51.75		
1ddzA	496	53.44	c.53.2.1,c.53.2.1	33372,33373
1vjpA	394	53.59	c.2.1.3,d.81.1.3	100828,100829
2nsmA	439	54.83		
1iomA	377	58.15	a.103.1.1	83698
1e5mA	416	58.97	c.95.1.1,c.95.1.1	58973,58974
1t7lA	766	59.20		
1p3dA	475	59.32	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2vgeA	229	60.95		
3bamA	213	61.15	c.52.1.3	33288
2qisA	374	62.49		
1z1lA	345	64.46		
2basA	431	68.54	c.1.33.1,d.110.6.2	128244,128245
1r6uA	437	68.58	c.26.1.1	97163
2nx9A	464	71.91		
1qczA	169	75.55	c.23.8.1	31276
1tz9A	367	76.39	c.1.15.6	107466
2fhfA	1083	77.72		
2akoA	251	78.88	c.73.1.3	126923
2cxaA	256	79.48	d.108.1.6	130993
1xhdA	173	80.29	b.81.1.5	115295
2c92A	160	82.04		
2b0oE	301	82.74		
1ihbA	162	85.07	d.211.1.1	19161
1t13A	158	85.72		
2o37A	92	86.07		
2k29A	53	86.50		
1p49A	562	86.63	c.76.1.2	94089