# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yrlA	491	1.497		
2i76A	276	2.536		
2a4dA	160	4.075	d.20.1.1	126152
1np3A	338	6.453	a.100.1.2,c.2.1.6	85946,85947
1wdyA	285	9.412	d.211.1.1	114541
2ahrA	259	10.10	a.100.1.10,c.2.1.6	126775,126776
1yhlA	362	11.89		
1ybdA	239	13.35	c.73.1.3	122884
2co5A	99	15.08		
2dznA	228	15.61		
1zn6A	227	19.19	d.303.1.1	125373
2uytA	489	20.00		
1r59O	505	21.55	c.55.1.4,c.55.1.4	111697,111698
1o8bA	219	23.16	c.124.1.4,d.58.40.1	81180,81181
2f0xA	148	24.70	d.38.1.5	132673
2ogxB	270	26.89		
1n0qA	93	29.58	k.37.1.1	79754
1uohA	226	32.33	d.211.1.1	99690
1qq9A	284	35.02	c.56.5.4	33841
2qf2A	624	37.58		
2bneA	241	37.96	c.73.1.3	128824
1khyA	148	39.72	a.174.1.1	77410
1ustA	93	43.59	a.4.5.13	99884
1l7vA	326	43.73	f.22.1.1	73672
2gzsA	278	45.42		
1pk1B	89	46.53	a.60.1.2	118712
2ooxA	137	48.83		
1ql0A	241	50.40	d.4.1.2	37139
2gwdA	449	50.98		
1oy3D	282	51.14	d.211.1.1	87554
2zcoA	293	52.48		
2gifA	1057	56.24		
2odiA	238	56.34		
2o8nA	265	58.19		
1bd8	156	58.75		
2e8vA	340	58.83		
2nq2A	337	59.02		
1pprM	312	60.12	a.131.1.1,a.131.1.1	19502,19503
1qczA	169	64.30	c.23.8.1	31276
2etbA	256	67.00		
1kvkA	395	69.91	d.14.1.5,d.58.26.3	73060,73061
2qisA	374	74.26		
2rfaA	232	75.05		
2v0hA	456	75.21		
1q5dA	419	75.43	a.104.1.1	95891
1sznA	417	75.73	b.71.1.1,c.1.8.1	106162,106163
2ga1A	106	76.62	a.4.1.16	134850
1qgiA	259	77.63	d.2.1.7	37001
1aipC	196	79.87	a.5.2.2,d.43.1.1	58930,58931
1bd8A	156	81.24	d.211.1.1	19157
2ij2A	470	81.80	a.104.1.1	137449
1jpzA	473	82.89	a.104.1.1	67069
1ev7A	317	85.19	c.52.1.9	33315
1ihbA	162	87.17	d.211.1.1	19161
1ji6A	589	87.29	b.18.1.3,b.77.2.1,f.1.3.1	63066,63067,63068
1gp8A	40	87.91	j.58.1.1	46342
2o37A	92	88.16		
1s0aA	429	88.78	c.67.1.4	98263
1vjeA	166	89.06	d.185.1.2	100807
2bkmA	128	89.85