# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	0.4904		
1yrlA	491	1.177		
1np3A	338	4.006	a.100.1.2,c.2.1.6	85946,85947
2ahrA	259	6.923	a.100.1.10,c.2.1.6	126775,126776
2a4dA	160	7.311	d.20.1.1	126152
2co5A	99	7.926		
1wdyA	285	8.903	d.211.1.1	114541
1qmgA	524	14.21	a.100.1.2,c.2.1.6	18785,30182
1yhlA	362	14.39		
1khyA	148	14.59	a.174.1.1	77410
2uytA	489	15.99		
1l7vA	326	17.13	f.22.1.1	73672
1qq9A	284	18.00	c.56.5.4	33841
1ybdA	239	18.55	c.73.1.3	122884
2nq2A	337	20.39		
1qczA	169	26.68	c.23.8.1	31276
2f0xA	148	27.28	d.38.1.5	132673
2dznA	228	28.87		
2o8nA	265	30.60		
2gifA	1057	31.39		
1pprM	312	32.32	a.131.1.1,a.131.1.1	19502,19503
1n0qA	93	36.54	k.37.1.1	79754
1r59O	505	40.51	c.55.1.4,c.55.1.4	111697,111698
1zv1A	65	42.99		
1ql0A	241	43.54	d.4.1.2	37139
2odiA	238	44.36		
1aipC	196	44.67	a.5.2.2,d.43.1.1	58930,58931
1uohA	226	48.10	d.211.1.1	99690
2bneA	241	52.89	c.73.1.3	128824
2qisA	374	54.65		
2zcoA	293	56.58		
2ihiA	395	57.76		
2o37A	92	58.97		
1zn6A	227	59.87	d.303.1.1	125373
1u11A	182	60.23	c.23.8.1	107576
1pk1B	89	61.06	a.60.1.2	118712
2v0hA	456	62.52		
1e1oA	504	63.55	b.40.4.1,d.104.1.1	25258,40714
1iowA	306	64.40	c.30.1.2,d.142.1.1	31713,41481
2akoA	251	67.41	c.73.1.3	126923
1kvkA	395	67.70	d.14.1.5,d.58.26.3	73060,73061
2etbA	256	68.68		
3bwuD	125	69.80		
2ogxB	270	70.92		
1jpzA	473	73.32	a.104.1.1	67069
2e8vA	340	73.48		
1ustA	93	75.29	a.4.5.13	99884
2bnqD	203	76.73		
1y8qA	346	76.93		
1w85B	324	77.00	c.36.1.7,c.48.1.2	114336,114337
1pea	385	79.20		
1qgeE	97	79.55		
2bf5A	98	80.55	d.137.1.1	128405
2qgsA	225	82.32		
1o8bA	219	84.74	c.124.1.4,d.58.40.1	81180,81181
2af4C	333	85.36	c.77.1.5	126656
1oy3D	282	85.85	d.211.1.1	87554
2ij2A	470	88.33	a.104.1.1	137449
2zaiA	497	89.75