# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qq9A	284	3.218	c.56.5.4	33841
1yrlA	491	3.413		
1khyA	148	9.275	a.174.1.1	77410
1qczA	169	11.04	c.23.8.1	31276
1cxqA	162	17.84	c.55.3.2	33621
1w85B	324	24.24	c.36.1.7,c.48.1.2	114336,114337
1hv9A	456	29.82	b.81.1.4,c.68.1.5	28060,34518
2v0hA	456	31.59		
1u11A	182	34.87	c.23.8.1	107576
1o4vA	183	37.80	c.23.8.1	86628
2r1fA	270	41.81		
1umdB	324	42.81	c.36.1.7,c.48.1.2	99600,99601
1iv8A	720	44.54	b.71.1.1,c.1.8.1	76842,76843
2d1cA	496	47.36		
1yhlA	362	53.44		
1t0qA	498	53.51	a.25.1.2	106220
2qrvB	230	55.05		
1x0lA	333	57.94		
1s1mA	545	61.40	c.23.16.1,c.37.1.10	105201,105202
2p2eA	128	62.06		
1z3aA	168	62.70	c.97.1.2	124396
2i76A	276	64.15		
1ql0A	241	64.52	d.4.1.2	37139
3c37A	253	65.98		
2pa4A	323	66.26		
2dm9A	198	67.54		
2g3kA	94	70.64	a.24.28.1	134562
2f0xA	148	74.18	d.38.1.5	132673
2b59B	172	75.27	a.139.1.1,b.3.2.2	127880,127881
2hlsA	243	77.04		
1vjeA	166	78.27	d.185.1.2	100807
2ywxA	157	78.66		
2etbA	256	80.26		
2co5A	99	84.67		
2a8nA	144	85.46	c.97.1.2	126408
1odkA	235	88.14	c.56.2.1	86863
2a10A	125	89.55	d.58.56.1	125965