# TARGET T0393 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0393.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.6639 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.010 0.014 0.562 0.004 0.005 0.007 0.002 0.001 0.070 0.091 0.006 0.185 0.042 2 D 0.005 0.014 0.624 0.001 0.005 0.012 0.002 0.001 0.032 0.034 0.007 0.015 0.246 3 A 0.004 0.047 0.535 0.010 0.056 0.082 0.003 0.002 0.041 0.064 0.024 0.060 0.071 4 D 0.001 0.003 0.608 0.006 0.085 0.122 0.001 0.001 0.009 0.059 0.050 0.016 0.040 5 S 0.001 0.001 0.024 0.001 0.251 0.471 0.001 0.001 0.001 0.020 0.226 0.001 0.004 6 E 0.001 0.002 0.026 0.001 0.138 0.681 0.001 0.001 0.001 0.030 0.116 0.002 0.003 7 Q 0.001 0.002 0.035 0.001 0.040 0.849 0.001 0.001 0.001 0.023 0.041 0.001 0.006 8 R 0.001 0.002 0.022 0.001 0.013 0.929 0.001 0.001 0.001 0.010 0.019 0.001 0.002 9 K 0.001 0.001 0.010 0.001 0.004 0.966 0.001 0.001 0.001 0.004 0.010 0.001 0.002 10 S 0.001 0.001 0.004 0.001 0.002 0.983 0.001 0.001 0.001 0.002 0.005 0.001 0.001 11 L 0.002 0.001 0.003 0.001 0.001 0.983 0.001 0.001 0.001 0.001 0.003 0.001 0.003 12 H 0.002 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.002 0.002 0.001 13 L 0.002 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.003 0.001 0.003 14 A 0.004 0.001 0.001 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 A 0.008 0.001 0.001 0.001 0.002 0.979 0.001 0.001 0.001 0.001 0.004 0.001 0.003 16 V 0.003 0.001 0.001 0.001 0.002 0.977 0.001 0.001 0.001 0.001 0.011 0.001 0.002 17 F 0.003 0.001 0.001 0.001 0.005 0.961 0.001 0.001 0.001 0.001 0.022 0.002 0.002 18 T 0.001 0.001 0.003 0.001 0.004 0.968 0.001 0.001 0.001 0.002 0.018 0.001 0.002 19 C 0.001 0.001 0.006 0.001 0.006 0.956 0.001 0.001 0.001 0.008 0.021 0.001 0.001 20 N 0.001 0.001 0.014 0.001 0.008 0.905 0.001 0.001 0.001 0.014 0.056 0.001 0.001 21 F 0.001 0.001 0.022 0.001 0.008 0.918 0.001 0.001 0.001 0.010 0.039 0.001 0.001 22 T 0.001 0.001 0.010 0.001 0.006 0.961 0.001 0.001 0.001 0.006 0.014 0.001 0.001 23 N 0.001 0.001 0.002 0.001 0.004 0.984 0.001 0.001 0.001 0.002 0.007 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.005 0.001 0.001 25 M 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 26 Y 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 29 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 32 L 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.006 0.984 0.001 0.001 0.001 0.001 0.010 0.001 0.001 34 K 0.001 0.001 0.001 0.001 0.014 0.970 0.001 0.001 0.001 0.001 0.016 0.001 0.001 35 K 0.001 0.001 0.001 0.001 0.024 0.948 0.001 0.001 0.001 0.001 0.027 0.001 0.001 36 Y 0.001 0.001 0.008 0.001 0.008 0.395 0.001 0.001 0.001 0.020 0.568 0.001 0.001 37 N 0.001 0.001 0.048 0.001 0.003 0.035 0.001 0.001 0.001 0.039 0.873 0.001 0.001 38 L 0.001 0.012 0.744 0.001 0.004 0.017 0.001 0.001 0.002 0.161 0.058 0.001 0.001 39 P 0.001 0.012 0.763 0.001 0.008 0.025 0.001 0.001 0.006 0.160 0.022 0.001 0.003 40 F 0.001 0.006 0.115 0.001 0.319 0.351 0.001 0.001 0.009 0.077 0.120 0.001 0.001 41 D 0.001 0.005 0.103 0.001 0.350 0.391 0.001 0.001 0.011 0.060 0.076 0.001 0.002 42 V 0.001 0.007 0.084 0.001 0.251 0.563 0.001 0.001 0.006 0.037 0.047 0.002 0.003 43 M 0.001 0.015 0.082 0.001 0.031 0.760 0.001 0.001 0.014 0.033 0.057 0.001 0.004 44 L 0.001 0.005 0.063 0.001 0.038 0.782 0.001 0.001 0.003 0.077 0.023 0.005 0.001 45 P 0.001 0.001 0.016 0.001 0.015 0.898 0.001 0.001 0.001 0.009 0.057 0.001 0.002 46 L 0.001 0.001 0.009 0.001 0.017 0.941 0.001 0.001 0.001 0.006 0.024 0.001 0.001 47 I 0.001 0.001 0.006 0.001 0.010 0.968 0.001 0.001 0.001 0.003 0.011 0.001 0.001 48 D 0.001 0.001 0.001 0.001 0.004 0.989 0.001 0.001 0.001 0.001 0.005 0.001 0.001 49 E 0.001 0.001 0.001 0.001 0.007 0.980 0.001 0.001 0.001 0.001 0.012 0.001 0.001 50 T 0.001 0.001 0.001 0.001 0.005 0.981 0.001 0.001 0.001 0.001 0.011 0.001 0.001 51 A 0.001 0.001 0.001 0.001 0.005 0.983 0.001 0.001 0.001 0.001 0.011 0.001 0.001 52 R 0.001 0.001 0.001 0.001 0.012 0.968 0.001 0.001 0.001 0.001 0.019 0.001 0.001 53 K 0.001 0.001 0.001 0.001 0.016 0.922 0.001 0.001 0.001 0.001 0.059 0.001 0.001 54 V 0.001 0.001 0.007 0.001 0.026 0.915 0.001 0.001 0.001 0.003 0.048 0.001 0.001 55 H 0.001 0.001 0.018 0.001 0.058 0.728 0.001 0.001 0.002 0.013 0.177 0.001 0.002 56 E 0.001 0.002 0.052 0.001 0.039 0.534 0.001 0.001 0.005 0.025 0.336 0.001 0.004 57 L 0.001 0.015 0.248 0.001 0.021 0.336 0.001 0.001 0.011 0.172 0.185 0.005 0.006 58 E 0.001 0.005 0.637 0.001 0.007 0.059 0.001 0.001 0.008 0.232 0.037 0.008 0.006 59 P 0.001 0.007 0.404 0.002 0.081 0.241 0.001 0.001 0.015 0.087 0.148 0.002 0.013 60 K 0.001 0.012 0.148 0.009 0.253 0.333 0.001 0.002 0.016 0.074 0.134 0.010 0.008 61 T 0.002 0.008 0.128 0.005 0.323 0.338 0.001 0.001 0.014 0.038 0.105 0.006 0.033 62 A 0.005 0.009 0.108 0.008 0.280 0.389 0.003 0.003 0.025 0.034 0.098 0.017 0.022 63 Q 0.013 0.022 0.143 0.005 0.053 0.277 0.008 0.006 0.026 0.075 0.284 0.036 0.052 64 T 0.024 0.035 0.259 0.010 0.020 0.218 0.004 0.006 0.020 0.201 0.139 0.022 0.041 65 G 0.010 0.013 0.350 0.005 0.021 0.129 0.001 0.002 0.011 0.309 0.042 0.090 0.017 66 P 0.003 0.008 0.196 0.005 0.066 0.364 0.001 0.001 0.009 0.061 0.236 0.002 0.049 67 A 0.005 0.012 0.081 0.008 0.306 0.428 0.001 0.002 0.006 0.037 0.097 0.012 0.005 68 I 0.011 0.015 0.124 0.004 0.137 0.479 0.002 0.002 0.013 0.057 0.093 0.009 0.055 69 R 0.002 0.006 0.088 0.003 0.125 0.394 0.001 0.001 0.007 0.072 0.282 0.008 0.013 70 Y 0.001 0.013 0.109 0.001 0.026 0.402 0.001 0.001 0.004 0.090 0.344 0.004 0.006 71 D 0.001 0.007 0.461 0.001 0.010 0.326 0.001 0.001 0.002 0.164 0.018 0.003 0.008 72 E 0.001 0.001 0.018 0.001 0.011 0.931 0.001 0.001 0.001 0.014 0.024 0.001 0.001 73 N 0.001 0.001 0.008 0.001 0.021 0.928 0.001 0.001 0.001 0.009 0.032 0.001 0.001 74 V 0.001 0.001 0.006 0.001 0.019 0.961 0.001 0.001 0.001 0.003 0.009 0.001 0.002 75 I 0.001 0.001 0.002 0.001 0.005 0.985 0.001 0.001 0.001 0.001 0.006 0.001 0.001 76 G 0.001 0.001 0.001 0.001 0.010 0.983 0.001 0.001 0.001 0.001 0.004 0.001 0.001 77 N 0.001 0.001 0.001 0.001 0.004 0.964 0.001 0.001 0.001 0.001 0.030 0.001 0.001 78 H 0.001 0.001 0.002 0.001 0.002 0.980 0.001 0.001 0.001 0.002 0.014 0.001 0.001 79 L 0.001 0.001 0.002 0.001 0.006 0.976 0.001 0.001 0.001 0.002 0.013 0.001 0.001 80 R 0.001 0.001 0.002 0.001 0.020 0.925 0.001 0.001 0.001 0.001 0.052 0.001 0.001 81 M 0.001 0.001 0.002 0.001 0.054 0.885 0.001 0.001 0.001 0.002 0.056 0.001 0.001 82 L 0.001 0.002 0.018 0.001 0.097 0.809 0.001 0.001 0.001 0.013 0.058 0.001 0.002 83 A 0.001 0.002 0.033 0.001 0.030 0.326 0.001 0.001 0.003 0.048 0.555 0.001 0.002 84 D 0.001 0.006 0.137 0.001 0.021 0.257 0.001 0.001 0.003 0.154 0.420 0.001 0.001 85 D 0.001 0.003 0.487 0.001 0.015 0.192 0.001 0.001 0.001 0.275 0.026 0.001 0.001 86 P 0.001 0.001 0.025 0.001 0.098 0.733 0.001 0.001 0.001 0.028 0.114 0.001 0.001 87 A 0.001 0.001 0.015 0.001 0.092 0.773 0.001 0.001 0.001 0.012 0.106 0.001 0.001 88 M 0.001 0.001 0.016 0.001 0.014 0.961 0.001 0.001 0.001 0.003 0.005 0.001 0.001 89 Q 0.001 0.001 0.003 0.001 0.002 0.988 0.001 0.001 0.001 0.003 0.004 0.001 0.001 90 R 0.001 0.001 0.001 0.001 0.002 0.986 0.001 0.001 0.001 0.001 0.009 0.001 0.001 91 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 92 Y 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 L 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.006 0.001 0.001 96 S 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.010 0.001 0.001 97 R 0.001 0.001 0.001 0.001 0.003 0.985 0.001 0.001 0.001 0.001 0.011 0.001 0.001 98 S 0.001 0.001 0.002 0.001 0.012 0.939 0.001 0.001 0.001 0.002 0.044 0.001 0.001 99 I 0.001 0.001 0.007 0.001 0.027 0.855 0.001 0.001 0.001 0.002 0.106 0.001 0.001 100 H 0.001 0.002 0.038 0.001 0.073 0.712 0.001 0.001 0.003 0.014 0.148 0.003 0.005 101 E 0.001 0.006 0.130 0.002 0.042 0.384 0.001 0.001 0.010 0.087 0.301 0.012 0.023 102 R 0.002 0.017 0.432 0.003 0.021 0.128 0.001 0.001 0.014 0.145 0.200 0.012 0.027 103 Q 0.001 0.004 0.786 0.001 0.004 0.012 0.001 0.001 0.004 0.148 0.014 0.019 0.007