# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1odoA	408	1.933	a.104.1.1	92783
1yrlA	491	3.302		
1r59O	505	5.075	c.55.1.4,c.55.1.4	111697,111698
2p3rA	510	5.827	c.55.1.4,c.55.1.4	139471,139472
2i76A	276	6.469		
2f6lA	166	6.562	a.130.1.4	133049
2gwdA	449	6.773		
1i36A	264	12.05	a.100.1.8,c.2.1.6	71108,71109
2co5A	99	13.95		
2f8yA	223	14.06		
2pv7A	298	16.31		
1f0yA	302	18.15	a.100.1.3,c.2.1.6	18793,30197
2d0bA	310	19.45		
2d4wA	504	28.41		
2rcyA	262	30.60		
1mkmA	249	31.04	a.4.5.33,d.110.2.2	79242,79243
2uytA	489	32.00		
1yyhA	253	33.24		
2etbA	256	34.68		
1pea	385	34.85		
2a4dA	160	35.07	d.20.1.1	126152
1vpdA	299	35.14	a.100.1.1,c.2.1.6	113951,113952
1z6mA	175	36.85	c.47.1.13	124529
2qisA	374	37.78		
1xkpA	246	38.10	a.243.1.3	122086
1w85B	324	38.95	c.36.1.7,c.48.1.2	114336,114337
1ux8A	132	39.47	a.1.1.1	113449
2aotA	292	39.73	c.66.1.19	127098
1qgiA	259	39.88	d.2.1.7	37001
2k29A	53	41.39		
1nthA	458	41.61	c.1.25.1	80730
1swxA	209	41.98	a.224.1.1	106075
1ueoA	63	42.95	j.107.1.1	99269
1tujA	123	43.70		
1ympA	135	43.91		
2bkmA	128	44.58		
1peaA	385	44.79	c.93.1.1	35662
1wdyA	285	48.67	d.211.1.1	114541
2io8A	619	49.56	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2qgsA	225	50.83		
1np3A	338	51.32	a.100.1.2,c.2.1.6	85946,85947
1qf6A	642	52.84	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
2vgeA	229	53.58		
1qyaA	307	54.04	d.21.1.2,d.21.1.2	104653,104654
1pk1B	89	54.83	a.60.1.2	118712
1ev7A	317	55.18	c.52.1.9	33315
2rfmA	192	58.53		
2ozlB	341	62.96	c.36.1.7,c.48.1.2	139447,139448
1ycsB	239	63.55	d.211.1.1,b.34.2.1	19155,24553
1qmgA	524	64.95	a.100.1.2,c.2.1.6	18785,30182
1dkuA	317	66.08	c.61.1.2,c.61.1.2	34118,34119
1lwdA	413	67.78	c.77.1.1	78265
2h12A	436	69.21		
2c78A	405	70.71	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
2pexA	153	71.74		
1k6kA	143	72.91	a.174.1.1	77274
2g3kA	94	75.57	a.24.28.1	134562
1x0vA	354	76.47		
2iwzA	438	77.70		
1xfrA	128	79.24		
1uohA	226	81.37	d.211.1.1	99690
2jabA	136	86.36		
2croA	71	88.29	a.35.1.2	17038