# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yrlA 491 1.857 2f6lA 166 2.833 a.130.1.4 133049 1odoA 408 3.165 a.104.1.1 92783 1tujA 123 3.410 2p3rA 510 5.389 c.55.1.4,c.55.1.4 139471,139472 1np3A 338 7.832 a.100.1.2,c.2.1.6 85946,85947 2i76A 276 8.174 1pk1B 89 8.460 a.60.1.2 118712 2pexA 153 11.22 2co5A 99 11.70 2rcyA 262 12.03 1nthA 458 12.03 c.1.25.1 80730 1vpdA 299 12.22 a.100.1.1,c.2.1.6 113951,113952 1r59O 505 13.38 c.55.1.4,c.55.1.4 111697,111698 1xfrA 128 13.88 3c86A 328 16.09 1z6mA 175 16.27 c.47.1.13 124529 1qmgA 524 16.96 a.100.1.2,c.2.1.6 18785,30182 1x0vA 354 20.22 2k29A 53 20.89 2i5uA 83 21.07 2io8A 619 22.64 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 1mkmA 249 22.78 a.4.5.33,d.110.2.2 79242,79243 2d2jA 329 23.44 c.1.9.3 131175 1i36A 264 24.28 a.100.1.8,c.2.1.6 71108,71109 2uytA 489 24.88 1qf6A 642 25.98 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1k6kA 143 26.84 a.174.1.1 77274 2d4wA 504 28.15 2c78A 405 28.33 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2p71A 132 29.60 a.39.2.1 139516 2gkmA 136 34.48 2ea7A 434 35.82 2vbaA 406 36.16 1dqeA 137 39.86 a.39.2.1 17388 1w85B 324 41.87 c.36.1.7,c.48.1.2 114336,114337 2qgsA 225 42.67 2om6A 235 44.59 2f8yA 223 45.50 2ffiA 288 50.41 c.1.9.15 133385 2d0bA 310 51.42 1tf1A 198 52.15 d.110.2.2 106826 1wdyA 285 52.95 d.211.1.1 114541 1s48A 609 53.22 e.8.1.4 98475 1pea 385 53.68 2hcfA 234 55.00 c.108.1.6 136333 2gwdA 449 55.28 1peaA 385 55.66 c.93.1.1 35662 1u55A 188 55.80 d.278.1.1 107677 1ux8A 132 56.47 a.1.1.1 113449 1aipC 196 57.54 a.5.2.2,d.43.1.1 58930,58931 2pv7A 298 58.90 1z91A 147 60.66 a.4.5.28 124736 1ytfB 53 62.52 a.32.1.1 16997 2e8vA 340 63.05 1z82A 335 63.93 1kkhA 317 64.60 d.14.1.5,d.58.26.3 72645,72646 1y8qA 346 65.27 1zv1A 65 65.35 1xkpA 246 65.40 a.243.1.3 122086 2a4dA 160 66.12 d.20.1.1 126152 1f0yA 302 67.45 a.100.1.3,c.2.1.6 18793,30197 1bplB 294 68.08 b.71.1.1 27716 1nm2A 317 68.12 c.19.1.1,d.58.23.1 80654,80655 1ympA 135 69.07 2ozlB 341 70.84 c.36.1.7,c.48.1.2 139447,139448 1usgA 346 71.43 c.93.1.1 99864 1i0dA 332 72.89 c.1.9.3 61487 2c7yA 404 73.38 1y7yA 74 76.81 a.35.1.3 122729 3c24A 286 79.37 2h12A 436 80.24 2gbbA 156 81.50 1hqkA 154 82.13 c.16.1.1 65902 2vgeA 229 82.20 2b5aA 77 82.26 a.35.1.3 127882 1ixhA 321 83.46 c.94.1.1 35761 1z67A 135 83.67 a.259.1.1 124507 2etbA 256 84.44 1fx3A 169 88.10 d.33.1.1 38524 1atiA 505 89.11 c.51.1.1,d.104.1.1 33196,40745 1bu6O 501 89.82 c.55.1.4,c.55.1.4 33499,33500