# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1i36A	264	15.76	a.100.1.8,c.2.1.6	71108,71109
2a4dA	160	15.80	d.20.1.1	126152
2d0bA	310	25.54		
2etbA	256	28.57		
2f8yA	223	32.67		
1odoA	408	34.05	a.104.1.1	92783
1nthA	458	34.77	c.1.25.1	80730
2f6lA	166	36.81	a.130.1.4	133049
2co5A	99	37.27		
1w8gA	234	37.93		
2qisA	374	39.27		
1w85B	324	39.47	c.36.1.7,c.48.1.2	114336,114337
2ooxA	137	41.20		
2py6A	409	43.64		
2h12A	436	44.98		
2p3rA	510	45.74	c.55.1.4,c.55.1.4	139471,139472
1e19A	314	46.78	c.73.1.1	34967
1xkpA	246	47.63	a.243.1.3	122086
1qf6A	642	50.43	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
2gwdA	449	51.12		
2k29A	53	52.39		
1ux8A	132	59.06	a.1.1.1	113449
2ozlB	341	59.30	c.36.1.7,c.48.1.2	139447,139448
2uytA	489	61.13		
1f0yA	302	64.17	a.100.1.3,c.2.1.6	18793,30197
1umdB	324	65.99	c.36.1.7,c.48.1.2	99600,99601
2rfmA	192	67.69		
1yyhA	253	68.89		
1tujA	123	69.24		
2p71A	132	69.98	a.39.2.1	139516
1yv5A	374	70.06		
1wdyA	285	70.67	d.211.1.1	114541
2j5bA	348	72.09		
2i76A	276	74.91		
1swxA	209	76.54	a.224.1.1	106075
1ueoA	63	81.68	j.107.1.1	99269
2bkmA	128	81.77		
1n0qA	93	82.74	k.37.1.1	79754
1ev7A	317	83.70	c.52.1.9	33315
2aotA	292	84.70	c.66.1.19	127098
1peaA	385	84.83	c.93.1.1	35662
1np3A	338	85.11	a.100.1.2,c.2.1.6	85946,85947
2d4wA	504	88.90		
1usgA	346	89.05	c.93.1.1	99864