# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1i36A	264	13.57	a.100.1.8,c.2.1.6	71108,71109
1w85B	324	16.59	c.36.1.7,c.48.1.2	114336,114337
2etbA	256	17.42		
2py6A	409	20.43		
2a4dA	160	24.61	d.20.1.1	126152
2d0bA	310	25.91		
2p3rA	510	29.64	c.55.1.4,c.55.1.4	139471,139472
1w8gA	234	29.79		
2ozlB	341	31.78	c.36.1.7,c.48.1.2	139447,139448
2gwdA	449	32.60		
1odoA	408	33.00	a.104.1.1	92783
2f8yA	223	33.32		
1nthA	458	33.34	c.1.25.1	80730
1qf6A	642	34.00	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
2f6lA	166	34.07	a.130.1.4	133049
2qisA	374	36.87		
2ooxA	137	37.56		
2co5A	99	38.53		
1umdB	324	38.67	c.36.1.7,c.48.1.2	99600,99601
1e19A	314	38.88	c.73.1.1	34967
1x7yB	342	41.18	c.36.1.7,c.48.1.2	114945,114946
1xkpA	246	42.54	a.243.1.3	122086
1tujA	123	46.99		
1swxA	209	54.27	a.224.1.1	106075
1ux8A	132	59.59	a.1.1.1	113449
1yrlA	491	61.03		
2uytA	489	62.09		
2j5bA	348	62.30		
2p71A	132	67.67	a.39.2.1	139516
1jztA	246	70.74	c.104.1.1	63319
1yv5A	374	73.36		
2ywuA	181	73.55		
2pg3A	232	75.46		
2h12A	436	76.01		
2va1A	256	76.36		
2k29A	53	78.70		
2d4wA	504	79.00		
2bkmA	128	80.64		
1yyhA	253	81.68		
1f0yA	302	84.01	a.100.1.3,c.2.1.6	18793,30197
1ueoA	63	84.23	j.107.1.1	99269