# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yrlA	491	11.29		
2f94F	350	12.81		
1lxjA	104	16.45	d.58.48.1	84736
1lxnA	99	19.67	d.58.48.1	84737
1yqhA	109	20.42	d.58.48.1	123886
2dvtA	327	20.82	c.1.9.15	131793
1z6mA	175	22.11	c.47.1.13	124529
2ogtA	498	27.34		
2co5A	99	30.30		
1vmhA	144	30.96	d.273.1.1	113677
1vmfA	145	33.03	d.273.1.1	113673
1yv5A	374	33.54		
1gqpA	221	34.31	b.18.1.9	70372
2qisA	374	38.22		
1qmgA	524	38.57	a.100.1.2,c.2.1.6	18785,30182
1rp0A	284	39.08	c.3.1.6	118782
1wl8A	189	41.13	c.23.16.1	120997
1xbfA	140	42.46	d.273.1.1	109538
2f6lA	166	43.15	a.130.1.4	133049
1cjbA	231	43.69	c.61.1.1	34079
1peaA	385	49.96	c.93.1.1	35662
1r59O	505	50.49	c.55.1.4,c.55.1.4	111697,111698
2pq7A	220	52.97		
2p6cA	137	56.12		
1vphA	149	56.35	d.273.1.1	113955
1w85B	324	56.93	c.36.1.7,c.48.1.2	114336,114337
1j5wA	298	57.65	d.104.1.1	71589
1pea	385	60.96		
1qgoA	264	63.09	c.92.1.2	35596
1uby	367	65.28		
1mkmA	249	66.04	a.4.5.33,d.110.2.2	79242,79243
1umdB	324	67.42	c.36.1.7,c.48.1.2	99600,99601
1y9iA	178	68.44	a.195.1.1	116586
2heuA	401	68.53		
1nthA	458	68.80	c.1.25.1	80730
1qf6A	642	68.97	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
1w2wA	211	69.54	c.124.1.5	109130
2g3kA	94	69.98	a.24.28.1	134562
1s2dA	167	73.42	c.23.14.1	98377
2f2sA	406	74.58		
3cjpA	272	75.84		
1vmjA	151	76.58	d.273.1.1	113679
2j9uA	96	78.35	a.24.28.1	138155
2c78A	405	78.87	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
2vg0A	227	78.90		
2j8mA	172	80.58		
2e8vA	340	80.82		
2croA	71	83.22	a.35.1.2	17038
2hcfA	234	83.82	c.108.1.6	136333
2bv9A	290	85.92	c.1.8.3	129242
1x7yB	342	87.35	c.36.1.7,c.48.1.2	114945,114946
2qgsA	225	88.32		
1itwA	741	88.36	c.77.1.2	76793
3bc9A	599	89.49