# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1i36A	264	9.594	a.100.1.8,c.2.1.6	71108,71109
1odoA	408	11.02	a.104.1.1	92783
2p3rA	510	18.45	c.55.1.4,c.55.1.4	139471,139472
2f6lA	166	21.42	a.130.1.4	133049
2co5A	99	21.73		
1z6mA	175	24.05	c.47.1.13	124529
1yrlA	491	25.97		
2pv7A	298	32.91		
2d0bA	310	33.29		
2uytA	489	33.35		
1vpdA	299	37.42	a.100.1.1,c.2.1.6	113951,113952
2etbA	256	38.09		
2gwdA	449	39.47		
2f8yA	223	48.44		
2j9uA	96	49.57	a.24.28.1	138155
2qisA	374	49.84		
2rcyA	262	53.60		
1yv5A	374	58.40		
1w85B	324	59.81	c.36.1.7,c.48.1.2	114336,114337
2g3kA	94	60.51	a.24.28.1	134562
2ic7A	185	60.77		
1qf6A	642	61.36	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
1mkmA	249	61.55	a.4.5.33,d.110.2.2	79242,79243
2i76A	276	61.68		
1ueoA	63	64.36	j.107.1.1	99269
2j9wA	102	64.77		
1ux8A	132	65.70	a.1.1.1	113449
1tujA	123	66.23		
2k29A	53	72.88		
1nthA	458	74.58	c.1.25.1	80730
2h12A	436	80.90		
2rfmA	192	85.43		
1aipC	196	86.22	a.5.2.2,d.43.1.1	58930,58931
1f0yA	302	87.49	a.100.1.3,c.2.1.6	18793,30197
2c9hA	444	89.04