# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1wdyA 285 1.191 d.211.1.1 114541 1bd8A 156 1.425 d.211.1.1 19157 2jabA 136 3.723 1ympA 135 5.024 2gwdA 449 5.652 2qizA 982 9.067 2vgeA 229 9.487 2dznA 228 10.17 1w8gA 234 10.83 1odoA 408 11.21 a.104.1.1 92783 1n0qA 93 13.02 k.37.1.1 79754 2pvuA 272 14.34 2ha9A 446 14.50 2ic7A 185 17.79 1ot8A 239 18.62 d.211.1.1 93507 1yrlA 491 19.15 2a4dA 160 19.97 d.20.1.1 126152 2co5A 99 20.61 2qm1A 326 20.63 2zcoA 293 21.80 2f6lA 166 23.23 a.130.1.4 133049 1i36A 264 23.85 a.100.1.8,c.2.1.6 71108,71109 1t7lA 766 24.70 2rfaA 232 26.08 1ycsB 239 26.44 d.211.1.1,b.34.2.1 19155,24553 1bkcE 256 26.77 d.92.1.10 40333 1qmgA 524 26.86 a.100.1.2,c.2.1.6 18785,30182 1j6wA 175 28.57 d.185.1.2 62663 2b0oE 301 28.67 1xfcA 384 29.81 1w85B 324 29.84 c.36.1.7,c.48.1.2 114336,114337 2o8nA 265 30.76 1eqfA 280 30.82 a.29.2.1,a.29.2.1 16972,16973 2olsA 794 30.98 1a8l 226 31.24 1ggzA 148 33.68 a.39.1.5 70176 1bd8 156 35.44 1usgA 346 35.68 c.93.1.1 99864 2etbA 256 36.33 3bamA 213 36.96 c.52.1.3 33288 1z6mA 175 37.41 c.47.1.13 124529 1jk3A 158 38.27 d.92.1.11 66790 2q4xA 221 39.75 a.132.1.3 139880 2jc9A 555 39.83 1bpyA 335 39.91 a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1cf9A 753 43.45 c.23.16.3,e.5.1.1 31441,42815 2d4wA 504 44.84 2pv7A 298 46.13 2vbaA 406 47.30 1yo8A 634 48.16 1z7wA 322 48.98 c.79.1.1 124674 1kewA 361 49.18 c.2.1.2 68544 1iomA 377 50.04 a.103.1.1 83698 1a5t 334 51.88 2j9uA 96 52.40 a.24.28.1 138155 1xwl 580 52.93 2f37A 251 53.60 3c3pA 210 54.29 1uohA 226 54.68 d.211.1.1 99690 1l5oA 356 57.85 c.39.1.1 77711 2p0tA 176 58.71 1y10A 407 59.06 2qisA 374 59.61 2om6A 235 60.26 1cc1L 498 61.55 e.18.1.1 43301 1qazA 351 63.70 a.102.3.1 18848 1eupA 403 63.75 a.104.1.1 18967 1pytA 94 64.03 d.58.3.1 39064 1k1aA 241 65.78 d.211.1.1 67992 1kqzA 273 66.04 c.1.8.5 68844 2ikqA 270 67.69 1ka2A 499 69.18 d.92.1.5 77305 1sw6A 327 69.90 d.211.1.1 19176 2k29A 53 70.08 1r55A 214 70.34 d.92.1.9 111694 2isnA 364 70.44 2rfmA 192 71.05 2rcyA 262 72.31 2g3kA 94 72.46 a.24.28.1 134562 2jfkA 433 73.44 2fnaA 357 74.52 a.4.5.11,c.37.1.20 133809,133810 2pajA 492 74.62 2f42A 179 75.06 1w2wA 211 76.23 c.124.1.5 109130 1bkcI 256 76.59 d.92.1.10 40334 1qbgA 272 77.33 c.23.5.3 31227 1swxA 209 77.55 a.224.1.1 106075 1sw5B 275 77.81 c.94.1.1 106070 1dp4A 435 77.99 c.93.1.1 35710 2pexA 153 79.42 1tujA 123 80.05 1ze3D 125 80.21 b.167.1.1 124976 1mkmA 249 80.77 a.4.5.33,d.110.2.2 79242,79243 1xkpA 246 81.83 a.243.1.3 122086 2h4aA 325 83.54 1ex7A 186 84.61 c.37.1.1 59537 1vljA 407 86.18 e.22.1.2 108832 2j9wA 102 86.19 2p8uA 478 86.74 1jigA 146 87.20 a.25.1.1 71685 1a8lA 226 88.05 c.47.1.2,c.47.1.2 32777,32778 2ac4A 309 88.05 2f6hX 419 88.42 1p80A 753 89.10 c.23.16.3,e.5.1.1 94337,94338 2e8vA 340 89.77