# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1odoA	408	2.500	a.104.1.1	92783
1yrlA	491	4.582		
2f6lA	166	5.812	a.130.1.4	133049
1i36A	264	7.130	a.100.1.8,c.2.1.6	71108,71109
2co5A	99	9.121		
2p3rA	510	14.27	c.55.1.4,c.55.1.4	139471,139472
1r59O	505	14.30	c.55.1.4,c.55.1.4	111697,111698
2i76A	276	15.14		
1tujA	123	15.28		
2f8yA	223	21.74		
1w85B	324	22.51	c.36.1.7,c.48.1.2	114336,114337
2a4dA	160	25.00	d.20.1.1	126152
1qf6A	642	25.12	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
1pk1B	89	28.70	a.60.1.2	118712
2qisA	374	29.23		
1z6mA	175	29.31	c.47.1.13	124529
1mkmA	249	30.59	a.4.5.33,d.110.2.2	79242,79243
2ea7A	434	34.42		
1qmgA	524	34.56	a.100.1.2,c.2.1.6	18785,30182
2etbA	256	38.59		
1np3A	338	39.24	a.100.1.2,c.2.1.6	85946,85947
2pv7A	298	43.24		
1xfrA	128	44.59		
2gwdA	449	44.90		
1swxA	209	44.97	a.224.1.1	106075
2qgsA	225	46.70		
1f0yA	302	47.55	a.100.1.3,c.2.1.6	18793,30197
2rcyA	262	49.80		
2aotA	292	51.74	c.66.1.19	127098
1ueoA	63	51.86	j.107.1.1	99269
2ozlB	341	52.03	c.36.1.7,c.48.1.2	139447,139448
1x7yB	342	52.92	c.36.1.7,c.48.1.2	114945,114946
2pexA	153	56.80		
1nthA	458	57.50	c.1.25.1	80730
1vpdA	299	57.81	a.100.1.1,c.2.1.6	113951,113952
1yyhA	253	60.75		
2d0bA	310	64.80		
1jztA	246	67.58	c.104.1.1	63319
2pg3A	232	68.17		
1pea	385	68.49		
1kkhA	317	68.89	d.14.1.5,d.58.26.3	72645,72646
2uytA	489	73.78		
1tf1A	198	73.93	d.110.2.2	106826
1k6kA	143	74.86	a.174.1.1	77274
1aipC	196	75.53	a.5.2.2,d.43.1.1	58930,58931
1yv5A	374	76.49		
2k29A	53	76.81		
1peaA	385	77.23	c.93.1.1	35662
2vbaA	406	78.40		
1ux8A	132	79.40	a.1.1.1	113449
2io8A	619	80.29	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1ve1A	304	80.74	c.79.1.1	120007
2ic7A	185	81.53		
1ympA	135	86.70		
2p71A	132	87.53	a.39.2.1	139516
1wdyA	285	89.30	d.211.1.1	114541