# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1odoA	408	3.691	a.104.1.1	92783
1yrlA	491	5.130		
2f6lA	166	6.381	a.130.1.4	133049
2co5A	99	9.778		
2p3rA	510	11.42	c.55.1.4,c.55.1.4	139471,139472
1i36A	264	12.12	a.100.1.8,c.2.1.6	71108,71109
2i76A	276	15.33		
1r59O	505	16.60	c.55.1.4,c.55.1.4	111697,111698
2pv7A	298	17.38		
2a4dA	160	19.76	d.20.1.1	126152
1tujA	123	25.44		
1mkmA	249	27.44	a.4.5.33,d.110.2.2	79242,79243
2rcyA	262	33.57		
2etbA	256	34.26		
1np3A	338	34.50	a.100.1.2,c.2.1.6	85946,85947
2gwdA	449	34.55		
1vpdA	299	37.43	a.100.1.1,c.2.1.6	113951,113952
2ooxA	137	39.05		
1w85B	324	39.94	c.36.1.7,c.48.1.2	114336,114337
1ux8A	132	40.74	a.1.1.1	113449
2qisA	374	40.96		
1f0yA	302	44.52	a.100.1.3,c.2.1.6	18793,30197
2d0bA	310	44.68		
1swxA	209	46.74	a.224.1.1	106075
1z6mA	175	47.69	c.47.1.13	124529
2f8yA	223	48.72		
2gkmA	136	50.70		
2k29A	53	51.18		
2ea7A	434	52.08		
1qf6A	642	54.07	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
1qmgA	524	55.66	a.100.1.2,c.2.1.6	18785,30182
1tf1A	198	56.47	d.110.2.2	106826
2uytA	489	56.77		
2pexA	153	58.64		
1ev7A	317	60.52	c.52.1.9	33315
1ueoA	63	61.38	j.107.1.1	99269
1e19A	314	61.39	c.73.1.1	34967
2pg3A	232	62.35		
2io8A	619	62.60	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2zcoA	293	63.99		
2d4wA	504	66.69		
2aotA	292	67.35	c.66.1.19	127098
2qgsA	225	67.82		
2ozlB	341	69.01	c.36.1.7,c.48.1.2	139447,139448
1xfrA	128	70.45		
2bkmA	128	71.67		
2liv	344	71.68		
1nthA	458	74.10	c.1.25.1	80730
2vbaA	406	74.74		
1jztA	246	75.58	c.104.1.1	63319
1k6kA	143	76.10	a.174.1.1	77274
1ympA	135	77.08		
1pk1B	89	77.31	a.60.1.2	118712
2iwzA	438	79.64		
1peaA	385	81.35	c.93.1.1	35662
2p71A	132	81.55	a.39.2.1	139516
2p0tA	176	86.28		
1pea	385	86.44		
1x7yB	342	87.09	c.36.1.7,c.48.1.2	114945,114946
1yyhA	253	88.92