# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vkhA	546	11.52		
1w85B	324	11.78	c.36.1.7,c.48.1.2	114336,114337
2dvtA	327	12.51	c.1.9.15	131793
2g29A	417	14.14		
2vg2A	284	16.66		
1peaA	385	18.11	c.93.1.1	35662
2ogtA	498	20.48		
1yrlA	491	21.22		
2ozlB	341	23.58	c.36.1.7,c.48.1.2	139447,139448
1bpyA	335	26.81	a.60.6.1,a.60.12.1,d.218.1.2	17980,75819,75820
2vg0A	227	29.06		
2f2sA	406	29.55		
1qgoA	264	30.47	c.92.1.2	35596
1umdB	324	34.43	c.36.1.7,c.48.1.2	99600,99601
2hm7A	310	36.37		
1x7yB	342	39.36	c.36.1.7,c.48.1.2	114945,114946
2o14A	375	39.67		
2qisA	374	43.36		
2p3rA	510	44.01	c.55.1.4,c.55.1.4	139471,139472
1s2dA	167	49.13	c.23.14.1	98377
2rjoA	332	50.86		
2d0bA	310	55.71		
2i49A	429	61.73		
2j5bA	348	64.13		
1qmgA	524	64.39	a.100.1.2,c.2.1.6	18785,30182
1tv9A	335	65.60	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
2z8fA	412	66.45		
2hpwA	233	67.13		
2pmuA	110	69.02		
2b3oA	532	70.54		
2c78A	405	74.93	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
2avpA	70	76.79	k.38.1.1	127382
3c9uA	342	77.20		
1r59O	505	77.85	c.55.1.4,c.55.1.4	111697,111698
2a0uA	383	78.28		
2qvcA	313	78.74		
2h3hA	313	80.01		
1zmdA	474	82.02		
3bc9A	599	82.71		
2bfdB	345	82.71	c.36.1.7,c.48.1.2	128419,128420
2co5A	99	83.07		
1xbfA	140	84.39	d.273.1.1	109538
1pea	385	85.11		
2gwdA	449	85.74		
1yv5A	374	86.73		
1z6mA	175	87.07	c.47.1.13	124529
1zc0A	309	88.21		
1ldg	316	89.26