# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j5wA	298	3.399	d.104.1.1	71589
1rp0A	284	13.10	c.3.1.6	118782
2hm7A	310	13.18		
1w85B	324	17.30	c.36.1.7,c.48.1.2	114336,114337
1yrlA	491	18.95		
1wl8A	189	23.13	c.23.16.1	120997
2ogtA	498	24.02		
2b99A	156	26.45		
1i7qB	193	27.70	c.23.16.1	61902
1umdB	324	31.74	c.36.1.7,c.48.1.2	99600,99601
2etbA	256	34.86		
2f6lA	166	39.87	a.130.1.4	133049
3cjpA	272	41.37		
1z2zA	446	44.11		
1qf6A	642	49.09	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
2co5A	99	50.05		
2d0bA	310	50.86		
1vjeA	166	53.64	d.185.1.2	100807
1ys7A	233	54.07	a.4.6.1,c.23.1.1	123961,123962
2dvtA	327	56.46	c.1.9.15	131793
1cxqA	162	58.13	c.55.3.2	33621
2oqrA	230	58.31		
1peaA	385	63.05	c.93.1.1	35662
1qmgA	524	64.64	a.100.1.2,c.2.1.6	18785,30182
2pmuA	110	66.23		
2g3kA	94	71.69	a.24.28.1	134562
1k6kA	143	74.76	a.174.1.1	77274
2croA	71	78.66	a.35.1.2	17038
1ev7A	317	82.42	c.52.1.9	33315
1pea	385	84.77		
2h4aA	325	86.50		
2ac7A	235	87.28	c.56.2.1	126543