# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r6oA 294 2.632 2p58C 116 3.409 2b5aA 77 3.580 a.35.1.3 127882 1sqgA 429 5.913 a.79.1.3,c.66.1.38 105912,105913 3b7hA 78 8.179 2nsfA 261 8.969 1xuuA 349 9.832 b.85.1.1,c.1.10.6 116067,116068 1tadA 324 10.37 a.66.1.1,c.37.1.8 18194,32077 1a6dB 543 10.63 a.129.1.2,c.8.5.2,d.56.1.2 19489,30820,38937 1zcbA 362 11.26 a.66.1.1,c.37.1.8 124901,124902 1uzcA 71 13.61 a.159.2.1 100222 3bs3A 76 15.05 3cecA 104 17.34 2nr7A 195 18.04 1f0jA 377 18.47 a.211.1.2 19346 2ef8A 84 19.24 1fl1A 230 20.19 b.57.1.1 27023 1utxA 66 21.29 a.35.1.3 108034 2i76A 276 22.14 2d4wA 504 22.79 1w33A 181 26.03 3bu8A 235 26.49 2a6hD 1524 26.80 e.29.1.2 126265 1j77A 209 27.26 a.132.1.2 62674 2zdrA 349 27.63 2bdwA 362 27.64 3cgvA 397 27.89 1r4wA 226 29.02 c.47.1.13 97050 1q3qA 548 29.47 a.129.1.2,c.8.5.2,d.56.1.2 95704,95705,95706 2bv9A 290 29.54 c.1.8.3 129242 1mn8A 100 29.89 a.61.1.6 79318 2gm5A 139 32.67 1qv9A 283 33.15 c.127.1.1 96356 2ou3A 161 33.82 1kp8A 547 35.37 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1sk7A 198 35.40 a.132.1.2 105671 2h5nA 133 35.43 1v8fA 276 35.56 c.26.1.4 100503 1jetA 517 35.97 c.94.1.1 35718 1z00B 84 36.01 a.60.2.5 124295 1yacA 208 36.25 c.33.1.3 31757 1y2kA 349 36.87 a.211.1.2 122571 1qqeA 292 37.00 a.118.8.1 19210 1ex2A 189 40.65 c.51.4.2 33225 2v25A 259 41.00 1yzxA 226 41.73 2vkjA 106 42.87 3mag 307 43.86 1k0iA 394 45.09 c.3.1.2,d.16.1.2 67942,67943 1awcB 153 48.64 d.211.1.1 19156 2qalM 117 49.39 1ejbA 168 50.41 c.16.1.1 59417 1rhcA 330 52.35 c.1.16.3 97468 2o4aA 93 52.40 2ictA 94 52.58 1cipA 353 53.41 a.66.1.1,c.37.1.8 18210,32093 1ui0A 205 53.43 c.18.1.2 99411 1zu0A 529 57.70 1adrA 76 58.32 a.35.1.2 17042 1n62B 809 58.50 d.41.1.1,d.133.1.1 80092,80093 1km3A 247 58.83 c.1.2.3 72739 1l3sA 580 59.72 c.55.3.5,e.8.1.1 84521,84522 2in3A 216 62.86 1w7jA 795 65.08 b.34.3.1,c.37.1.9 120688,120689 1oshA 232 66.01 a.123.1.1 93496 2cro 71 66.04 1d1qA 161 68.37 c.44.1.1 32642 1xfjA 261 68.66 d.194.1.2 109585 1in4A 334 69.15 a.4.5.11,c.37.1.20 62597,62598 3bqsA 93 69.41 1xwl 580 69.56 2qa1A 500 70.60 2otaA 76 72.35 1b0nA 111 73.35 a.34.1.1,a.35.1.3 17001,17064 2czlA 272 74.29 c.94.1.1 131055 2p4qA 497 74.49 1us7B 265 74.73 a.205.1.1 99858 1ir6A 424 75.08 c.107.1.2 71342 1xtyA 120 75.23 2croA 71 76.39 a.35.1.2 17038 2ppxA 99 76.52 1u3aA 189 77.24 c.47.1.13 119504 1tbbA 332 77.52 a.211.1.2 106741 1v38A 78 78.00 a.60.1.2 100280 1mkmA 249 78.01 a.4.5.33,d.110.2.2 79242,79243 2yxbA 161 78.20 2fliA 220 78.70 c.1.2.2 133714 1esiA 262 79.13 e.3.1.1 42682 1z82A 335 80.15 2afhE 289 80.94 c.37.1.10 126683 3c8nA 356 81.15 2nv0A 196 82.01 c.23.16.1 138625 2q88A 257 82.75 1xsvA 113 82.85 a.4.13.3 116003 1u7nA 336 84.77 c.77.1.4 107726 1vk2A 204 86.38 c.18.1.2 100845 2jdiA 510 86.98 1szhA 161 87.27 a.226.1.1 106157 1u2pA 163 87.47 1y7yA 74 87.80 a.35.1.3 122729 1s7oA 113 87.83 a.4.13.3 105354 1uohA 226 88.30 d.211.1.1 99690 1x0pA 143 89.62 d.58.10.2 121552 1sg4A 260 89.78 c.14.1.3 118957