Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2f1kA	9.4233e-16	2f1kA/T0393-2f1kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2i76A	3.2822e-12	2i76A/T0393-2i76A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ahrA	9.4326e-12	2ahrA/T0393-2ahrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.10 c.2.1.6
1vpdA	3.3279e-11	1vpdA/T0393-1vpdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2cvzA	5.4037e-11	2cvzA/T0393-2cvzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
1yqgA	7.3748e-11	1yqgA/T0393-1yqgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yb4A	1.0858e-10	1yb4A/T0393-1yb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pgjA	1.1233e-10	1pgjA/T0393-1pgjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
3c24A	2.4833e-10	3c24A/T0393-3c24A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h78A	3.7168e-10	2h78A/T0393-2h78A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bg6A	6.2659e-10	1bg6A/T0393-1bg6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.5 c.2.1.6
2graA	8.1266e-10	2graA/T0393-2graA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2izzA	1.4712e-09	2izzA/T0393-2izzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2b0jA	4.8292e-09	2b0jA/T0393-2b0jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.11 c.2.1.6
2pgd	5.6746e-09	2pgd/T0393-2pgd-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g5cA	6.6666e-09	2g5cA/T0393-2g5cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2rcyA	8.0546e-09	2rcyA/T0393-2rcyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgdA	1.4770e-08	2pgdA/T0393-2pgdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
1np3A	1.7390e-08	1np3A/T0393-1np3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
1bg6	1.7536e-08	1bg6/T0393-1bg6-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001