# List of top-scoring protein chains for T0393.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 3.75e-09 2i9pA 319 5.15e-09 2gf2A 296 5.24e-09 1vpdA 299 1.02e-08 a.100.1.1,c.2.1.6 113951,113952 2rcyA 262 5.60e-08 2cvzA 289 7.69e-08 a.100.1.1,c.2.1.6 130890,130891 2uyyA 316 8.68e-08 2i76A 276 8.89e-08 2ahrA 259 1.07e-07 a.100.1.10,c.2.1.6 126775,126776 3cumA 302 1.33e-07 2p4qA 497 1.46e-07 1yb4A 295 2.30e-07 2iz1A 474 2.79e-07 2iypA 473 2.86e-07 2iyoA 472 2.95e-07 2pgdA 482 6.64e-07 a.100.1.1,c.2.1.6 18778,30190 1pgjA 478 8.44e-07 a.100.1.1,c.2.1.6 18783,30195 1gpjA 404 1.31e-06 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2izzA 322 2.51e-06 2graA 277 2.79e-06 2gerA 321 3.47e-06 1z82A 335 4.27e-05 2f1kA 279 0.000367 a.100.1.12,c.2.1.6 132772,132773 2hk9A 275 0.000933 2hk8A 269 0.000934 1x0vA 354 0.001055 1evyA 366 0.001056 a.100.1.6,c.2.1.6 18811,30215 1wpqA 349 0.002194 2pv7A 298 0.008245 2plaA 349 0.01107 1zejA 293 0.01137 2eggA 297 0.01344 3c24A 286 0.01620 1txgA 335 0.02340 a.100.1.6,c.2.1.6 112775,112776 2dbqA 334 0.02781 2d5cA 263 0.03128 2o7sA 523 0.03347 1jayA 212 0.03374 c.2.1.6 66478 2g5cA 281 0.03389 a.100.1.12,c.2.1.6 134646,134647 2ew2A 316 0.04934 1zcjA 463 0.06522 1nvtA 287 0.06870 c.2.1.7,c.58.1.5 86270,86271 1nytA 271 0.08403 c.2.1.7,c.58.1.5 86417,86418 1i36A 264 0.08755 a.100.1.8,c.2.1.6 71108,71109 2d0iA 333 0.09689 2vhvA 377 0.1095 1yj8A 375 0.1224 2vojA 371 0.1315 2vhxA 377 0.1316 2rafA 209 0.1423 1pjcA 361 0.1772 c.2.1.4,c.23.12.2 30101,31361 1bg6A 359 0.2130 a.100.1.5,c.2.1.6 18810,30214 1xdwA 331 0.3461 2q50A 328 0.3501 2gcgA 330 0.3511 1np3A 338 0.3577 a.100.1.2,c.2.1.6 85946,85947 2rirA 300 0.4027 3hadA 308 0.4195 a.100.1.3,c.2.1.6 18799,30203 1m75A 302 0.4254 a.100.1.3,c.2.1.6 91212,91213 2i99A 312 0.4305 1p77A 272 0.4407 c.2.1.7,c.58.1.5 94214,94215 1lsoA 302 0.4498 a.100.1.3,c.2.1.6 91120,91121 2eezA 369 0.4567 1f17A 310 0.4587 a.100.1.3,c.2.1.6 18797,30201 1f0yA 302 0.4722 a.100.1.3,c.2.1.6 18793,30197 2hdhA 293 0.4833 a.100.1.3,c.2.1.6 18795,30199 1wwkA 307 0.5133 1lsjA 302 0.5210 a.100.1.3,c.2.1.6 91116,91117 1il0A 302 0.5819 a.100.1.3,c.2.1.6 66189,66190 1m76A 302 0.5997 a.100.1.3,c.2.1.6 91216,91217 2nloA 302 0.6319 3hdhA 302 0.6487 a.100.1.3,c.2.1.6 18805,30209 1yrlA 491 0.6632 1hyhA 309 0.7101 c.2.1.5,d.162.1.1 30150,42117 1dxyA 333 0.7224 c.2.1.4,c.23.12.1 30094,31354 2v6bA 304 0.9769 2dldA 337 1.046 c.2.1.4,c.23.12.1 30099,31359 2o4cA 380 1.326 1ygyA 529 1.640 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1a5zA 319 1.856 c.2.1.5,d.162.1.1 30181,42148 1qp8A 303 1.868 c.2.1.4,c.23.12.1 30092,31352 1lsuA 147 1.929 c.2.1.9 74250 1v9lA 421 1.941 c.2.1.7,c.58.1.1 113583,113584 2hmvA 144 1.949 c.2.1.9 136615 1mv8A 436 2.203 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2g1uA 155 2.655 1mx3A 347 2.980 c.2.1.4,c.23.12.1 79638,79639 1hkuA 358 3.003 c.2.1.4,c.23.12.1 83557,83558 2ep5A 350 3.044 1j4aA 333 3.203 c.2.1.4,c.23.12.1 71502,71503 1j49A 333 3.647 c.2.1.4,c.23.12.1 71498,71499 1li4A 432 3.681 c.2.1.4,c.23.12.3 84616,84617 1a7aA 432 3.693 c.2.1.4,c.23.12.3 30104,31364 1lssA 140 3.719 c.2.1.9 74246 2cukA 311 3.770 2eklA 313 3.882 2cd9A 366 3.891 2cdcA 366 3.911 2j6iA 364 3.988 2fssA 365 4.039 1b3rA 431 4.329 c.2.1.4,c.23.12.3 30106,31366 1xwfA 431 4.332 c.2.1.4,c.23.12.3 122392,122393 1lldA 319 4.575 c.2.1.5,d.162.1.1 30177,42144 2pi1A 334 4.652 1npyA 271 4.949 c.2.1.7,c.58.1.5 85995,85996 3ceaA 346 5.307 1ldbA 317 5.441 c.2.1.5,d.162.1.1 30174,42141 1ldnA 316 5.442 c.2.1.5,d.162.1.1 30166,42133 1wdkA 715 6.001 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 1uufA 369 6.334 b.35.1.2,c.2.1.1 100006,100007 2b0jA 358 6.481 a.100.1.11,c.2.1.6 127639,127640 1ys4A 354 6.977 1vknA 351 7.911 c.2.1.3,d.81.1.1 108676,108677 2hjrA 328 8.338 1f06A 320 8.474 c.2.1.3,d.81.1.3 59556,59557 2omeA 336 8.516 1dliA 402 8.989 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1d4fA 431 9.115 c.2.1.4,c.23.12.3 30110,31370 2c7vA 268 10.03 1ff9A 450 10.25 c.2.1.3,d.81.1.2 30039,39954 1tt5B 434 10.44 c.111.1.2 107292 2nvuB 805 10.60 c.111.1.2,c.94.1.1 138661,138662 1jw9B 249 10.74 c.111.1.1 67377 1zh8A 340 10.82 c.2.1.3,d.81.1.5 125077,125078 1yovB 444 10.98 c.111.1.2 123786 1dljA 402 11.01 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1r4mB 431 11.99 c.111.1.2 97000 1x7dA 350 11.99 c.2.1.13 114927 3bioA 304 12.46 2ofpA 320 12.49 a.100.1.7,c.2.1.6 139052,139053 2dc1A 236 13.22 2q4eA 362 13.63 2dvmA 439 13.71 1yqdA 366 14.63 2axqA 467 14.73 1j5pA 253 17.05 d.81.1.3,c.2.1.3 71577,83092 2p9gA 410 17.37 c.2.1.4,c.23.12.1,d.58.18.1 139574,139575,139576 2p9cA 410 17.51 c.2.1.4,c.23.12.1,d.58.18.1 139556,139557,139558 1y81A 138 18.29 c.2.1.8 122731 1zud1 251 18.37 1zfnA 253 18.37 1bvuA 418 19.28 c.2.1.7,c.58.1.1 30226,33874 2g76A 335 19.31 1ez4A 318 20.41 c.2.1.5,d.162.1.1 64917,64918 1yonA 303 20.42 a.100.1.7,c.2.1.6 123780,123781 1ks9A 291 20.57 a.100.1.7,c.2.1.6 68857,68858 2q49A 359 21.00 c.2.1.3,d.81.1.1 139831,139832 2q3eA 467 21.29 2vdcG 456 21.46 1guzA 310 22.21 c.2.1.5,d.162.1.1 65586,65587 2nacA 393 23.51 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 23.51 c.2.1.4,c.23.12.1 30095,31355 2go1A 401 23.87 1xg5A 279 23.90 c.2.1.2 115277 2jfgA 445 24.24 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1ybaA 410 24.76 c.2.1.4,c.23.12.1,d.58.18.1 122872,122873,122874 1psdA 409 24.76 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1piwA 360 24.83 b.35.1.2,c.2.1.1 104156,104157 2r2gA 318 24.96 4uagA 437 25.14 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1pr9A 244 26.76 c.2.1.2 95060 2r6jA 318 28.43 2cf5A 357 29.45 2ho3A 325 29.63 1tltA 319 30.46 c.2.1.3,d.81.1.5 107135,107136 2o4uX 334 32.13 1sc6A 404 32.14 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2bi7A 384 32.60 1wamA 384 32.60 c.4.1.3,d.16.1.7 120811,120812 2dpoA 319 33.21 2haeA 386 33.83 c.2.1.7,c.58.1.3 136278,136279 1vl6A 388 34.10 c.2.1.7,c.58.1.3 108724,108725 1nvmB 312 35.06 c.2.1.3,d.81.1.1 86251,86252 2g82A 331 35.59 c.2.1.3,d.81.1.1 134746,134747 2gsdA 402 35.77 2o3jA 481 37.02 1llcA 325 37.10 c.2.1.5,d.162.1.1 30176,42143 1h2hA 241 38.17 d.81.1.3,c.2.1.3 70861,83058 1luaA 287 40.66 c.2.1.7,c.58.1.4 78216,78217 1zovA 386 42.75 1gv1A 310 43.10 c.2.1.5,d.162.1.1 65598,65599 2z1nA 260 44.91 1vl8A 267 44.93 c.2.1.2 108733 1ykjA 394 45.29 1q7bA 244 48.54 c.2.1.2 96026 2cf2E 226 48.94 i.26.1.1 130363 2ldxA 331 49.55 c.2.1.5,d.162.1.1 30159,42126 1c0pA 363 50.42 c.4.1.2,d.16.1.3 30647,37934 2d4aA 308 51.24 1q7cA 244 53.15 c.2.1.2 96030 1y6jA 318 53.26 c.2.1.5,d.162.1.1 116507,116508 1omoA 322 56.79 c.2.1.13 104017 2ekpA 239 57.64 2ehdA 234 57.77 1cj2A 391 57.84 c.3.1.2,d.16.1.2 30351,37882 2a9fA 398 58.10 1vllA 334 59.34 c.2.1.13 108834 2c07A 285 61.59 c.2.1.2 129577 1qmgA 524 63.18 a.100.1.2,c.2.1.6 18785,30182 2gasA 307 63.38 1pj5A 830 63.70 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2ag5A 246 65.56 c.2.1.2 126719 3c1aA 315 68.53 1vc2A 331 68.97 c.2.1.3,d.81.1.1 100555,100556 3bhkA 390 69.51 1vi2A 300 69.99 c.2.1.7,c.58.1.5 100726,100727 1y8aA 332 70.29 2gf3A 389 70.35 c.3.1.2,d.16.1.3 135070,135071 1cf2O 337 72.01 c.2.1.3,d.81.1.1 29994,39909 1gegA 256 73.83 c.2.1.2 29888 1l9cA 389 75.90 c.3.1.2,d.16.1.3 77815,77816 1gv0A 310 75.92 c.2.1.5,d.162.1.1 65594,65595 1dobA 394 76.26 c.3.1.2,d.16.1.2 30362,37893 1npdA 288 76.53 c.2.1.7,c.58.1.5 80681,80682 1cydA 244 76.70 c.2.1.2 29825 1iutA 394 76.79 c.3.1.2,d.16.1.2 30355,37886 1k0iA 394 76.91 c.3.1.2,d.16.1.2 67942,67943 1pxcA 394 76.91 c.3.1.2,d.16.1.2 30361,37892 1pxbA 394 76.97 c.3.1.2,d.16.1.2 30367,37898 1pbeA 394 78.04 c.3.1.2,d.16.1.2 30338,37869 1pxaA 394 80.05 c.3.1.2,d.16.1.2 30366,37897 1yxmA 303 80.53 c.2.1.2 124192 1mxhA 276 81.41 c.2.1.2 91490 2cvoA 366 87.42 c.2.1.3,d.81.1.1 130877,130878 2b9wA 424 87.92 2ph3A 245 88.36 1uxjA 309 89.33 c.2.1.5,d.162.1.1 108112,108113 1w6uA 302 89.44 c.2.1.2 114288