# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 7.02e-07 2ahrA 259 9.96e-07 a.100.1.10,c.2.1.6 126775,126776 2graA 277 3.89e-06 1vpdA 299 5.76e-06 a.100.1.1,c.2.1.6 113951,113952 2rcyA 262 6.88e-06 2i76A 276 7.89e-06 2izzA 322 8.34e-06 2h78A 302 8.36e-06 2pgd 482 1.12e-05 1pgjA 478 1.20e-05 a.100.1.1,c.2.1.6 18783,30195 2cvzA 289 2.28e-05 a.100.1.1,c.2.1.6 130890,130891 1yb4A 295 2.34e-05 2pgdA 482 3.36e-05 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 3.48e-05 2f1kA 279 0.000122 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.000455 1bg6A 359 0.000671 a.100.1.5,c.2.1.6 18810,30214 1txgA 335 0.000757 a.100.1.6,c.2.1.6 112775,112776 1x0vA 354 0.000832 1evyA 366 0.001005 a.100.1.6,c.2.1.6 18811,30215 1bg6 359 0.001466 2b0jA 358 0.001689 a.100.1.11,c.2.1.6 127639,127640 1gpjA 404 0.003080 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1z82A 335 0.003255 2g5cA 281 0.003294 a.100.1.12,c.2.1.6 134646,134647 1i36A 264 0.007354 a.100.1.8,c.2.1.6 71108,71109 1np3A 338 0.01287 a.100.1.2,c.2.1.6 85946,85947 1jayA 212 0.01566 c.2.1.6 66478 2pv7A 298 0.01856 2dpoA 319 0.02197 2hdhA 293 0.02695 a.100.1.3,c.2.1.6 18795,30199 1nytA 271 0.03269 c.2.1.7,c.58.1.5 86417,86418 1f0yA 302 0.03907 a.100.1.3,c.2.1.6 18793,30197 1p77A 272 0.05240 c.2.1.7,c.58.1.5 94214,94215 2eggA 297 0.05672 2d5cA 263 0.1106 1zejA 293 0.1108 1zcjA 463 0.1222 2nloA 302 0.1223 1ff9A 450 0.1269 c.2.1.3,d.81.1.2 30039,39954 2hk9A 275 0.1273 1d4fA 431 0.1464 c.2.1.4,c.23.12.3 30110,31370 2axqA 467 0.2124 1b3rA 431 0.2159 c.2.1.4,c.23.12.3 30106,31366 1mv8A 436 0.2167 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1wwkA 307 0.2206 1npdA 288 0.2393 c.2.1.7,c.58.1.5 80681,80682 2ew2A 316 0.2679 1npyA 271 0.3221 c.2.1.7,c.58.1.5 85995,85996 2nadA 393 0.3482 c.2.1.4,c.23.12.1 30090,31350 1j4aA 333 0.3863 c.2.1.4,c.23.12.1 71502,71503 2nacA 393 0.4047 c.2.1.4,c.23.12.1 30088,31348 2dbqA 334 0.4093 2g76A 335 0.4467 1dxy 333 0.4699 1nvtA 287 0.4792 c.2.1.7,c.58.1.5 86270,86271 1pjcA 361 0.4915 c.2.1.4,c.23.12.2 30101,31361 1xdwA 331 0.4959 1ks9A 291 0.5082 a.100.1.7,c.2.1.6 68857,68858 2q4eA 362 0.5202 1mx3A 347 0.5301 c.2.1.4,c.23.12.1 79638,79639 1tltA 319 0.5329 c.2.1.3,d.81.1.5 107135,107136 1zh8A 340 0.5476 c.2.1.3,d.81.1.5 125077,125078 2o4uX 334 0.5490 2dldA 337 0.5707 c.2.1.4,c.23.12.1 30099,31359 1dxyA 333 0.5771 c.2.1.4,c.23.12.1 30094,31354 1gdhA 320 0.5836 c.2.1.4,c.23.12.1 30095,31355 2eklA 313 0.5923 2pi1A 334 0.5988 2nvwA 479 0.6001 c.2.1.3,d.81.1.5 138665,138666 1vi2A 300 0.6174 c.2.1.7,c.58.1.5 100726,100727 1qp8A 303 0.6234 c.2.1.4,c.23.12.1 30092,31352 1ygyA 529 0.6286 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2p2sA 336 0.6466 2glxA 332 0.6558 1rydA 387 0.6707 c.2.1.3,d.81.1.5 118801,118802 1sayA 361 0.6888 c.2.1.4,c.23.12.2 30102,31362 1li4A 432 0.6954 c.2.1.4,c.23.12.3 84616,84617 2gcgA 330 0.7023 2ho3A 325 0.7178 2cukA 311 0.7362 1ofgA 381 0.7609 c.2.1.3,d.81.1.5 30064,39979 2j6iA 364 0.7982 1a7aA 432 0.8583 c.2.1.4,c.23.12.3 30104,31364 2o4cA 380 0.8689 2fssA 365 0.8698 1psdA 409 0.9633 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1lssA 140 0.9919 c.2.1.9 74246 1xeaA 323 0.996 c.2.1.3,d.81.1.5 109572,109573 1v8bA 479 1.010 c.2.1.4,c.23.12.3 113564,113565 3ceaA 346 1.074 1h6dA 433 1.118 c.2.1.3,d.81.1.5 65656,65657 2d0iA 333 1.124 1sc6A 404 1.193 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o7sA 523 1.231 1dljA 402 1.241 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1xwfA 431 1.258 c.2.1.4,c.23.12.3 122392,122393 1luaA 287 1.364 c.2.1.7,c.58.1.4 78216,78217 1yrlA 491 1.414 2ixaA 444 1.511 1dliA 402 1.579 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1l7dA 384 1.691 c.2.1.4,c.23.12.2 77774,77775 1omoA 322 1.773 c.2.1.13 104017 2qytA 317 1.810 2vojA 371 1.990 3c1aA 315 2.001 2g1uA 155 2.249 1x7dA 350 2.280 c.2.1.13 114927 2vhxA 377 2.470 1vllA 334 2.549 c.2.1.13 108834 2o3jA 481 2.625 1lsuA 147 2.852 c.2.1.9 74250 6ldhA 329 3.933 c.2.1.5,d.162.1.1 30161,42128 2hsdA 253 3.959 c.2.1.2 29866 1gcuA 295 4.315 c.2.1.3,d.81.1.4 30063,39978 1qmgA 524 4.451 a.100.1.2,c.2.1.6 18785,30182 1ldg 316 4.866 1hdcA 253 5.008 c.2.1.2 29862 2gdzA 267 5.022 c.2.1.2 135043 1bdb 277 5.283 1ceqA 316 5.466 c.2.1.5,d.162.1.1 30163,42130 1ez4A 318 5.644 c.2.1.5,d.162.1.1 64917,64918 3c85A 183 5.975 2v7pA 310 6.441 2hmvA 144 6.649 c.2.1.9 136615 2a4kA 263 6.712 c.2.1.2 126156 1yb1A 272 6.863 c.2.1.2 116599 1hyhA 309 7.004 c.2.1.5,d.162.1.1 30150,42117 1drw 273 7.343 3bioA 304 8.125 1a5zA 319 8.316 c.2.1.5,d.162.1.1 30181,42148 1vl8A 267 8.853 c.2.1.2 108733 1q7bA 244 9.244 c.2.1.2 96026 1xg5A 279 10.07 c.2.1.2 115277 1x7gA 261 10.28 c.2.1.2 114929 1t2dA 322 10.39 c.2.1.5,d.162.1.1 99084,99085 1hxhA 253 10.48 c.2.1.2 76725 1id1A 153 10.58 c.2.1.9 62286 1f06A 320 10.61 c.2.1.3,d.81.1.3 59556,59557 1uxjA 309 11.45 c.2.1.5,d.162.1.1 108112,108113 1uufA 369 11.69 b.35.1.2,c.2.1.1 100006,100007 1h2bA 359 11.76 b.35.1.2,c.2.1.1 90543,90544 1ydeA 270 12.30 c.2.1.2 122980 1k2wA 256 12.48 c.2.1.2 90927 1gegA 256 12.48 c.2.1.2 29888 1xseA 295 12.54 c.2.1.2 115925 1ur5A 309 12.73 c.2.1.5,d.162.1.1 99807,99808 2r6jA 318 13.10 1pzgA 331 13.66 c.2.1.5,d.162.1.1 95425,95426 1guzA 310 13.77 c.2.1.5,d.162.1.1 65586,65587 1yxmA 303 14.21 c.2.1.2 124192 1n5dA 288 14.48 c.2.1.2 80030 1xu9A 286 14.56 c.2.1.2 116052 1xhlA 297 14.68 c.2.1.2 109591 2i6tA 303 14.89 2gptA 523 15.14 1y5mA 276 15.21 c.2.1.2 122645 1b8pA 329 15.25 c.2.1.5,d.162.1.1 30147,42114 1xkqA 280 16.08 c.2.1.2 115417 1nvmB 312 16.19 c.2.1.3,d.81.1.1 86251,86252 1c1dA 355 16.31 c.2.1.7,c.58.1.1 30270,33918 9ldtA 332 16.59 c.2.1.5,d.162.1.1 30154,42121 1vm6A 228 16.90 d.81.1.3,c.2.1.3 108877,118631 1iy8A 267 16.91 c.2.1.2 83774 2pnfA 248 16.92 1jw9B 249 17.16 c.111.1.1 67377 1drwA 273 17.79 c.2.1.3,d.81.1.3 30057,39972 1edoA 244 18.03 c.2.1.2 29896 1ja9A 274 18.10 c.2.1.2 62817 2bgkA 278 18.17 c.2.1.2 128480 2ewdA 317 18.19 1e6wA 260 18.41 c.2.1.2 59326 1y81A 138 18.49 c.2.1.8 122731 1lc0A 294 18.60 c.2.1.3,d.81.1.4 73823,73824 1ldnA 316 18.62 c.2.1.5,d.162.1.1 30166,42133 1spxA 278 18.94 c.2.1.2 98958 2g17A 337 19.41 c.2.1.3,d.81.1.1 134512,134513 2c07A 285 19.96 c.2.1.2 129577 1zemA 262 20.04 c.2.1.2 124984 1y1pA 342 20.08 c.2.1.2 122550 3csuA 310 20.28 c.78.1.1,c.78.1.1 35094,35095 1e3jA 352 20.28 b.35.1.2,c.2.1.1 24765,29781 2bkaA 242 20.50 c.2.1.2 128666 1lnqA 336 20.51 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1vjtA 483 21.14 c.2.1.5,d.162.1.2 100833,100834 1nffA 260 21.24 c.2.1.2 80457 1he2A 206 21.58 c.2.1.2 60966 1bw9A 356 21.75 c.2.1.7,c.58.1.1 30274,33922 1g0oA 283 22.08 c.2.1.2 60181 1iukA 140 22.39 c.2.1.8 83712 1lldA 319 22.56 c.2.1.5,d.162.1.1 30177,42144 2cfcA 250 22.61 2jahA 247 22.95 1w6uA 302 23.31 c.2.1.2 114288 1e3sA 261 23.52 c.2.1.2 59201 1wmaA 276 23.67 c.2.1.2 121042 1ybvA 283 23.78 c.2.1.2 29948 1cydA 244 25.97 c.2.1.2 29825 2c2xA 281 26.10 1lluA 342 26.54 b.35.1.2,c.2.1.1 91064,91065 1kevA 351 26.71 b.35.1.2,c.2.1.1 24749,29765 2o23A 265 27.06 c.2.1.2 138884 1bdmA 327 27.27 c.2.1.5,d.162.1.1 30137,42104 2d59A 144 27.29 c.2.1.8 131266 2ph5A 480 27.55 1zk4A 251 27.72 c.2.1.2 125176 2ae2A 260 27.97 c.2.1.2 29945 1b0aA 288 27.99 c.2.1.7,c.58.1.2 30286,33934 2h6eA 344 28.11 2zbwA 335 28.83 1vknA 351 28.85 c.2.1.3,d.81.1.1 108676,108677 1h5qA 265 29.19 c.2.1.2 60643 1pl8A 356 29.21 b.35.1.2,c.2.1.1 94878,94879 1ekxA 311 29.24 c.78.1.1,c.78.1.1 35088,35089 1sbyA 254 30.40 c.2.1.2 118930 1vl6A 388 30.41 c.2.1.7,c.58.1.3 108724,108725 2pd6A 264 30.50 3ldh 330 31.02 i.12.1.1 46015 2ag5A 246 32.22 c.2.1.2 126719 2d8aA 348 32.22 1f8fA 371 32.52 b.35.1.2,c.2.1.1 83246,83247 1gcoA 261 32.64 c.2.1.2 29884 8atcA 310 33.82 c.78.1.1,c.78.1.1 35132,35133 1ae1A 273 35.60 c.2.1.2 29943 1xgkA 352 35.66 c.2.1.2 115286 1hdoA 206 35.93 c.2.1.2 60965 1fmcA 255 36.12 c.2.1.2 29856 1bgvA 449 36.40 c.2.1.7,c.58.1.1 30217,33865 1othA 321 36.92 c.78.1.1,c.78.1.1 35260,35261 1ml4A 308 37.11 c.78.1.1,c.78.1.1 79255,79256 1zud1 251 38.07 1k6xA 352 38.08 c.2.1.2 68238 1a4iA 301 38.77 c.2.1.7,c.58.1.2 30278,33926 1lehA 364 39.13 c.2.1.7,c.58.1.1 30268,33916 2q49A 359 39.82 c.2.1.3,d.81.1.1 139831,139832 2bmaA 470 40.31 1pvvA 315 40.56 c.78.1.1,c.78.1.1 95190,95191 2z1nA 260 40.70 2bd0A 244 41.28 c.2.1.2 128321 1acmA 310 42.03 c.78.1.1,c.78.1.1 35180,35181 1x13A 401 42.79 1kyqA 274 44.60 c.2.1.11,e.37.1.1 73281,73282 1jqbA 351 44.67 b.35.1.2,c.2.1.1 77151,77152 1vj0A 380 45.04 b.35.1.2,c.2.1.1 100786,100787 2p91A 285 45.86 1y9aA 360 46.49 2r00A 336 46.86 2czcA 334 47.15 d.81.1.1 131044 1hwyA 501 47.22 c.2.1.7,c.58.1.1 30262,33910 2o57A 297 47.37 2gz1A 366 48.50 c.2.1.3,d.81.1.1 135887,135888 1a71A 374 48.75 b.35.1.2,c.2.1.1 24673,29689 1mjfA 281 48.98 c.66.1.17 79198 1y8qB 640 49.30 3cc8A 230 50.38 2cf5A 357 50.45 2nwqA 272 50.87 2aefA 234 51.96 2cmdA 312 52.27 c.2.1.5,d.162.1.1 30135,42102 1yqdA 366 52.57 1yovA 537 52.81 c.111.1.2 123785 1axeA 374 53.13 b.35.1.2,c.2.1.1 24681,29697 1axgA 374 54.94 b.35.1.2,c.2.1.1 24691,29707 1c14A 262 56.18 c.2.1.2 29927 1u8xX 472 56.65 c.2.1.5,d.162.1.2 107741,107742 1fl2A 310 57.43 c.3.1.5,c.3.1.5 59869,59870 2ouiA 360 57.50 1u3wA 374 57.60 b.35.1.2,c.2.1.1 113013,113014 1e5dA 402 58.45 c.23.5.1,d.157.1.3 31208,42061 1ys4A 354 58.84 1qycA 308 59.26 c.2.1.2 96581 1b16A 254 59.27 c.2.1.2 29875 1edzA 320 60.86 c.2.1.7,c.58.1.2 30287,33935 1pedA 351 61.25 b.35.1.2,c.2.1.1 24753,29769 2c29D 337 61.26 2i6uA 307 61.43 1kdgA 546 63.00 c.3.1.2,d.16.1.1 77337,77338 1dapA 320 64.80 c.2.1.3,d.81.1.3 30053,39968 1y8qA 346 64.80 3bkwA 243 65.13 2b5wA 357 65.87 2jhfA 374 66.57 b.35.1.2,c.2.1.1 138314,138315 2cdcA 366 67.42 1trb 320 67.95 1gtmA 419 68.76 c.2.1.7,c.58.1.1 30223,33871 1dhr 241 69.24 1ykfA 352 69.47 b.35.1.2,c.2.1.1 24757,29773 2ef0A 301 69.99 1kolA 398 70.38 b.35.1.2,c.2.1.1 77474,77475 1qydA 313 71.59 c.2.1.2 96583 2fr1A 486 72.64 c.2.1.2,c.2.1.2 133961,133962 1j5pA 253 74.69 d.81.1.3,c.2.1.3 71577,83092 1b3bA 415 75.02 c.2.1.7,c.58.1.1 30244,33892 3grsA 478 75.60 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2nxcA 254 76.04 c.66.1.39 138739 2qa1A 500 77.48 3grs 478 78.59 1h7xA 1025 79.82 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2blnA 305 79.93 b.46.1.1,c.65.1.1 128734,128735 1l8qA 324 80.06 a.4.12.2,c.37.1.20 77809,77810 2scuA 288 80.65 c.2.1.8,c.23.4.1 30303,31131 1kpgA 287 81.35 c.66.1.18 68735 1zmdA 474 81.56 1l9cA 389 82.30 c.3.1.2,d.16.1.3 77815,77816 1vqwA 457 82.56 c.3.1.5,c.3.1.5 114028,114029 2bllA 345 84.44 c.2.1.2 128733 1b26A 416 84.97 c.2.1.7,c.58.1.1 30232,33880 2p5yA 311 85.38 1k89 449 85.39 2gf3A 389 85.60 c.3.1.2,d.16.1.3 135070,135071 1ee2A 373 87.71 b.35.1.2,c.2.1.1 24663,29679 2r0cA 549 87.72 2yquA 455 87.94 1pg5A 299 88.88 c.78.1.1,c.78.1.1 104146,104147