# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 0.000874 2ahrA 259 0.001233 a.100.1.10,c.2.1.6 126775,126776 1vpdA 299 0.001918 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 0.002028 2izzA 322 0.002556 2i76A 276 0.002815 2cvzA 289 0.002832 a.100.1.1,c.2.1.6 130890,130891 2rcyA 262 0.002868 2graA 277 0.003255 1yb4A 295 0.003704 1pgjA 478 0.004001 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 0.005295 2pgdA 482 0.01131 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.01426 a.100.1.12,c.2.1.6 132772,132773 2p4qA 497 0.01433 3c24A 286 0.01992 1evyA 366 0.02390 a.100.1.6,c.2.1.6 18811,30215 1bg6A 359 0.02823 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.03043 1txgA 335 0.03469 a.100.1.6,c.2.1.6 112775,112776 2g5cA 281 0.03828 a.100.1.12,c.2.1.6 134646,134647 2b0jA 358 0.05064 a.100.1.11,c.2.1.6 127639,127640 1bg6 359 0.06618 1i36A 264 0.08374 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 0.1037 1np3A 338 0.1159 a.100.1.2,c.2.1.6 85946,85947 2pv7A 298 0.1809 1gpjA 404 0.2808 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1f0yA 302 0.3347 a.100.1.3,c.2.1.6 18793,30197 2hdhA 293 0.4623 a.100.1.3,c.2.1.6 18795,30199 1zcjA 463 0.4656 1jayA 212 0.5445 c.2.1.6 66478 2dpoA 319 0.5608 1nytA 271 0.7731 c.2.1.7,c.58.1.5 86417,86418 1zejA 293 0.8389 1mv8A 436 1.088 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2eggA 297 1.171 2d5cA 263 1.252 1npdA 288 1.468 c.2.1.7,c.58.1.5 80681,80682 1p77A 272 1.849 c.2.1.7,c.58.1.5 94214,94215 2nloA 302 1.903 2hk9A 275 2.008 1xdwA 331 2.035 1j4aA 333 2.125 c.2.1.4,c.23.12.1 71502,71503 1ks9A 291 2.405 a.100.1.7,c.2.1.6 68857,68858 2ew2A 316 2.613 2nadA 393 2.630 c.2.1.4,c.23.12.1 30090,31350 1dljA 402 2.723 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2o3jA 481 2.800 1dliA 402 3.044 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2dbqA 334 3.134 1npyA 271 3.154 c.2.1.7,c.58.1.5 85995,85996 1yrlA 491 3.385 1dxy 333 3.538 1lssA 140 3.789 c.2.1.9 74246 1gdhA 320 3.900 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 3.939 c.2.1.4,c.23.12.1 30088,31348 1mx3A 347 4.165 c.2.1.4,c.23.12.1 79638,79639 1vi2A 300 4.296 c.2.1.7,c.58.1.5 100726,100727 1pjcA 361 4.349 c.2.1.4,c.23.12.2 30101,31361 1wwkA 307 4.517 2o7sA 523 4.769 1lsuA 147 5.009 c.2.1.9 74250 1ff9A 450 5.026 c.2.1.3,d.81.1.2 30039,39954 2d0iA 333 5.226 2g76A 335 5.407 1dxyA 333 5.447 c.2.1.4,c.23.12.1 30094,31354 2dldA 337 5.711 c.2.1.4,c.23.12.1 30099,31359 1sc6A 404 5.913 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1ygyA 529 6.052 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1nvtA 287 6.188 c.2.1.7,c.58.1.5 86270,86271 1qp8A 303 6.430 c.2.1.4,c.23.12.1 30092,31352 2nvwA 479 6.800 c.2.1.3,d.81.1.5 138665,138666 2pi1A 334 7.126 1luaA 287 7.145 c.2.1.7,c.58.1.4 78216,78217 2p2sA 336 7.328 2o4cA 380 7.439 2g1uA 155 7.459 1xeaA 323 7.775 c.2.1.3,d.81.1.5 109572,109573 6ldhA 329 7.874 c.2.1.5,d.162.1.1 30161,42128 2cukA 311 7.877 1id1A 153 7.901 c.2.1.9 62286 2j6iA 364 8.092 2fssA 365 9.117 1qmgA 524 9.117 a.100.1.2,c.2.1.6 18785,30182 2o4uX 334 9.798 3c85A 183 10.14 1psdA 409 10.17 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2axqA 467 11.07 1omoA 322 11.11 c.2.1.13 104017 1l7dA 384 11.78 c.2.1.4,c.23.12.2 77774,77775 2eklA 313 11.86 1li4A 432 12.07 c.2.1.4,c.23.12.3 84616,84617 3ceaA 346 12.11 2vojA 371 12.16 1tltA 319 12.41 c.2.1.3,d.81.1.5 107135,107136 2hmvA 144 13.15 c.2.1.9 136615 1sayA 361 13.18 c.2.1.4,c.23.12.2 30102,31362 1vllA 334 13.45 c.2.1.13 108834 2ho3A 325 13.83 1zh8A 340 13.85 c.2.1.3,d.81.1.5 125077,125078 1ceqA 316 15.12 c.2.1.5,d.162.1.1 30163,42130 1ldg 316 15.15 2qytA 317 15.57 2q4eA 362 15.71 2vhxA 377 16.44 1pjqA 457 17.66 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2gcgA 330 17.79 1ez4A 318 18.76 c.2.1.5,d.162.1.1 64917,64918 1xwfA 431 18.80 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 19.16 c.2.1.4,c.23.12.3 30110,31370 1h6dA 433 19.46 c.2.1.3,d.81.1.5 65656,65657 1a5zA 319 21.06 c.2.1.5,d.162.1.1 30181,42148 2gptA 523 21.20 3c1aA 315 21.35 2ixaA 444 22.83 1uxjA 309 24.68 c.2.1.5,d.162.1.1 108112,108113 1lnqA 336 24.78 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1guzA 310 25.29 c.2.1.5,d.162.1.1 65586,65587 2ouiA 360 25.31 2glxA 332 25.49 1pzgA 331 25.70 c.2.1.5,d.162.1.1 95425,95426 1y9aA 360 26.22 2gdzA 267 26.73 c.2.1.2 135043 1h2bA 359 26.80 b.35.1.2,c.2.1.1 90543,90544 2aefA 234 27.00 1hdcA 253 27.20 c.2.1.2 29862 1b3rA 431 27.41 c.2.1.4,c.23.12.3 30106,31366 1hyhA 309 28.62 c.2.1.5,d.162.1.1 30150,42117 1pl8A 356 29.34 b.35.1.2,c.2.1.1 94878,94879 2v7pA 310 29.90 1c1dA 355 29.97 c.2.1.7,c.58.1.1 30270,33918 1x7dA 350 30.85 c.2.1.13 114927 2cf5A 357 30.92 1f06A 320 31.83 c.2.1.3,d.81.1.3 59556,59557 1t2dA 322 32.37 c.2.1.5,d.162.1.1 99084,99085 1ur5A 309 32.79 c.2.1.5,d.162.1.1 99807,99808 2cdcA 366 34.11 1rydA 387 35.01 c.2.1.3,d.81.1.5 118801,118802 1mjfA 281 35.46 c.66.1.17 79198 1kevA 351 35.98 b.35.1.2,c.2.1.1 24749,29765 1vj0A 380 36.50 b.35.1.2,c.2.1.1 100786,100787 1bdb 277 37.49 1bw9A 356 37.71 c.2.1.7,c.58.1.1 30274,33922 1y81A 138 38.12 c.2.1.8 122731 2b5wA 357 38.92 2h6eA 344 39.32 3bioA 304 40.07 1ldnA 316 40.10 c.2.1.5,d.162.1.1 30166,42133 1h7xA 1025 40.25 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2g17A 337 41.35 c.2.1.3,d.81.1.1 134512,134513 1a71A 374 41.39 b.35.1.2,c.2.1.1 24673,29689 1lluA 342 41.49 b.35.1.2,c.2.1.1 91064,91065 1axeA 374 41.53 b.35.1.2,c.2.1.1 24681,29697 2hsdA 253 41.55 c.2.1.2 29866 1lc0A 294 42.61 c.2.1.3,d.81.1.4 73823,73824 2i6tA 303 43.11 2d8aA 348 44.39 1zk4A 251 44.74 c.2.1.2 125176 1yb1A 272 44.92 c.2.1.2 116599 2d59A 144 47.04 c.2.1.8 131266 1gcuA 295 47.16 c.2.1.3,d.81.1.4 30063,39978 1f8fA 371 47.25 b.35.1.2,c.2.1.1 83246,83247 1axgA 374 47.83 b.35.1.2,c.2.1.1 24691,29707 2bkaA 242 48.13 c.2.1.2 128666 1eudA 311 48.43 c.2.1.8,c.23.4.1 30312,31140 1kyqA 274 49.32 c.2.1.11,e.37.1.1 73281,73282 1zk7A 467 50.09 2jhfA 374 53.51 b.35.1.2,c.2.1.1 138314,138315 1mo9A 523 53.88 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1nvmB 312 54.02 c.2.1.3,d.81.1.1 86251,86252 1lldA 319 55.83 c.2.1.5,d.162.1.1 30177,42144 1yqdA 366 55.87 1xkqA 280 56.44 c.2.1.2 115417 2a4kA 263 56.51 c.2.1.2 126156 3csuA 310 56.69 c.78.1.1,c.78.1.1 35094,35095 1xseA 295 56.74 c.2.1.2 115925 2q49A 359 57.53 c.2.1.3,d.81.1.1 139831,139832 1yxmA 303 58.48 c.2.1.2 124192 1jqbA 351 58.64 b.35.1.2,c.2.1.1 77151,77152 9ldtA 332 59.61 c.2.1.5,d.162.1.1 30154,42121 1k2wA 256 59.61 c.2.1.2 90927 2ewdA 317 60.20 1sbyA 254 60.38 c.2.1.2 118930 1iukA 140 61.14 c.2.1.8 83712 1ofgA 381 61.52 c.2.1.3,d.81.1.5 30064,39979 1xhlA 297 61.62 c.2.1.2 109591 2zbwA 335 61.93 1h5qA 265 63.25 c.2.1.2 60643 1xu9A 286 63.97 c.2.1.2 116052 1ps9A 671 66.74 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1jw9B 249 66.99 c.111.1.1 67377 1oi7A 288 67.15 c.2.1.8,c.23.4.1 87049,87050 1n8kA 374 67.43 b.35.1.2,c.2.1.1 80298,80299 1kolA 398 69.43 b.35.1.2,c.2.1.1 77474,77475 2gz1A 366 70.78 c.2.1.3,d.81.1.1 135887,135888 1e3jA 352 71.51 b.35.1.2,c.2.1.1 24765,29781 1hwyA 501 72.43 c.2.1.7,c.58.1.1 30262,33910 1ykfA 352 73.25 b.35.1.2,c.2.1.1 24757,29773 1cydA 244 75.79 c.2.1.2 29825 1y8qB 640 77.62 1iy8A 267 78.21 c.2.1.2 83774 1vl6A 388 78.31 c.2.1.7,c.58.1.3 108724,108725 1zmdA 474 81.03 1w6uA 302 81.90 c.2.1.2 114288 1b26A 416 82.14 c.2.1.7,c.58.1.1 30232,33880 1spxA 278 82.37 c.2.1.2 98958 1wpgA 994 82.57 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1b0aA 288 82.97 c.2.1.7,c.58.1.2 30286,33934 1l8qA 324 84.11 a.4.12.2,c.37.1.20 77809,77810 1b8pA 329 85.11 c.2.1.5,d.162.1.1 30147,42114 1y5mA 276 85.39 c.2.1.2 122645 1a4iA 301 85.83 c.2.1.7,c.58.1.2 30278,33926 1e3sA 261 87.50 c.2.1.2 59201 1nffA 260 87.96 c.2.1.2 80457 1b3bA 415 89.66 c.2.1.7,c.58.1.1 30244,33892 1vm6A 228 89.84 d.81.1.3,c.2.1.3 108877,118631