# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 6.20e-08 2ahrA 259 2.40e-07 a.100.1.10,c.2.1.6 126775,126776 2graA 277 3.85e-07 1vpdA 299 5.44e-07 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 5.60e-07 2rcyA 262 5.66e-07 2i76A 276 5.66e-07 1pgjA 478 8.94e-07 a.100.1.1,c.2.1.6 18783,30195 2izzA 322 9.13e-07 1yb4A 295 1.23e-06 2cvzA 289 2.15e-06 a.100.1.1,c.2.1.6 130890,130891 2pgd 482 2.22e-06 2pgdA 482 5.53e-06 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 6.95e-06 a.100.1.12,c.2.1.6 132772,132773 2p4qA 497 2.26e-05 1bg6A 359 3.33e-05 a.100.1.5,c.2.1.6 18810,30214 1evyA 366 3.67e-05 a.100.1.6,c.2.1.6 18811,30215 1txgA 335 4.50e-05 a.100.1.6,c.2.1.6 112775,112776 1x0vA 354 5.23e-05 3c24A 286 8.39e-05 2g5cA 281 9.96e-05 a.100.1.12,c.2.1.6 134646,134647 1z82A 335 0.000117 2b0jA 358 0.000229 a.100.1.11,c.2.1.6 127639,127640 1bg6 359 0.000237 1i36A 264 0.000382 a.100.1.8,c.2.1.6 71108,71109 1np3A 338 0.001034 a.100.1.2,c.2.1.6 85946,85947 1gpjA 404 0.001295 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2pv7A 298 0.001655 1jayA 212 0.009089 c.2.1.6 66478 1nytA 271 0.01038 c.2.1.7,c.58.1.5 86417,86418 2hdhA 293 0.01351 a.100.1.3,c.2.1.6 18795,30199 2dpoA 319 0.01740 1zcjA 463 0.02066 1f0yA 302 0.02173 a.100.1.3,c.2.1.6 18793,30197 1p77A 272 0.02377 c.2.1.7,c.58.1.5 94214,94215 1mv8A 436 0.02776 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2eggA 297 0.04015 2nloA 302 0.05785 1ks9A 291 0.07453 a.100.1.7,c.2.1.6 68857,68858 2d5cA 263 0.07777 2hk9A 275 0.08940 1zejA 293 0.1459 2ew2A 316 0.1466 1npdA 288 0.1500 c.2.1.7,c.58.1.5 80681,80682 1npyA 271 0.1842 c.2.1.7,c.58.1.5 85995,85996 1ff9A 450 0.2354 c.2.1.3,d.81.1.2 30039,39954 1d4fA 431 0.2617 c.2.1.4,c.23.12.3 30110,31370 1dliA 402 0.2760 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dxy 333 0.2829 1dljA 402 0.2856 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2nadA 393 0.3052 c.2.1.4,c.23.12.1 30090,31350 2o3jA 481 0.3184 1j4aA 333 0.3194 c.2.1.4,c.23.12.1 71502,71503 1b3rA 431 0.3386 c.2.1.4,c.23.12.3 30106,31366 1wwkA 307 0.3483 2g76A 335 0.3750 2axqA 467 0.3874 1mx3A 347 0.4130 c.2.1.4,c.23.12.1 79638,79639 2nvwA 479 0.4273 c.2.1.3,d.81.1.5 138665,138666 1nvtA 287 0.4514 c.2.1.7,c.58.1.5 86270,86271 1dxyA 333 0.4592 c.2.1.4,c.23.12.1 30094,31354 1xdwA 331 0.4598 2nacA 393 0.4745 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 0.4758 c.2.1.4,c.23.12.1 30095,31355 1tltA 319 0.4841 c.2.1.3,d.81.1.5 107135,107136 1pjcA 361 0.5298 c.2.1.4,c.23.12.2 30101,31361 2o7sA 523 0.5374 2dbqA 334 0.5480 1yrlA 491 0.6015 2dldA 337 0.6510 c.2.1.4,c.23.12.1 30099,31359 2j6iA 364 0.6637 2gcgA 330 0.6822 2eklA 313 0.6843 1vi2A 300 0.7277 c.2.1.7,c.58.1.5 100726,100727 2ho3A 325 0.7339 2o4cA 380 0.7519 2fssA 365 0.7527 1ygyA 529 0.7783 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1qp8A 303 0.8126 c.2.1.4,c.23.12.1 30092,31352 2g1uA 155 0.8197 1qmgA 524 0.9283 a.100.1.2,c.2.1.6 18785,30182 2pi1A 334 1.019 2cukA 311 1.038 1lssA 140 1.057 c.2.1.9 74246 1a7aA 432 1.072 c.2.1.4,c.23.12.3 30104,31364 2d0iA 333 1.199 1li4A 432 1.242 c.2.1.4,c.23.12.3 84616,84617 1psdA 409 1.426 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1h6dA 433 1.535 c.2.1.3,d.81.1.5 65656,65657 1zh8A 340 1.610 c.2.1.3,d.81.1.5 125077,125078 1ofgA 381 1.650 c.2.1.3,d.81.1.5 30064,39979 2p2sA 336 1.659 2q4eA 362 1.721 1omoA 322 1.739 c.2.1.13 104017 1rydA 387 1.743 c.2.1.3,d.81.1.5 118801,118802 1sc6A 404 1.769 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1luaA 287 1.793 c.2.1.7,c.58.1.4 78216,78217 2glxA 332 1.879 2o4uX 334 1.880 1l7dA 384 2.030 c.2.1.4,c.23.12.2 77774,77775 1gcuA 295 2.275 c.2.1.3,d.81.1.4 30063,39978 3ceaA 346 2.296 3c85A 183 2.381 3c1aA 315 2.382 1xeaA 323 2.529 c.2.1.3,d.81.1.5 109572,109573 2qytA 317 2.562 1v8bA 479 2.776 c.2.1.4,c.23.12.3 113564,113565 1vllA 334 3.128 c.2.1.13 108834 1ldg 316 3.155 1xwfA 431 3.300 c.2.1.4,c.23.12.3 122392,122393 2ixaA 444 3.334 2vojA 371 3.431 1x7dA 350 3.452 c.2.1.13 114927 2vhxA 377 3.542 1ceqA 316 3.660 c.2.1.5,d.162.1.1 30163,42130 1lsuA 147 4.943 c.2.1.9 74250 1uufA 369 5.565 b.35.1.2,c.2.1.1 100006,100007 1bw9A 356 5.672 c.2.1.7,c.58.1.1 30274,33922 2hsdA 253 6.663 c.2.1.2 29866 1ez4A 318 6.856 c.2.1.5,d.162.1.1 64917,64918 1hdcA 253 6.866 c.2.1.2 29862 2cdcA 366 6.867 6ldhA 329 7.029 c.2.1.5,d.162.1.1 30161,42128 1guzA 310 7.909 c.2.1.5,d.162.1.1 65586,65587 1e3jA 352 8.155 b.35.1.2,c.2.1.1 24765,29781 2q49A 359 8.569 c.2.1.3,d.81.1.1 139831,139832 2b5wA 357 9.164 1c1dA 355 9.682 c.2.1.7,c.58.1.1 30270,33918 2bkaA 242 10.10 c.2.1.2 128666 2gptA 523 10.26 1lc0A 294 10.91 c.2.1.3,d.81.1.4 73823,73824 1lnqA 336 11.23 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1uxjA 309 11.78 c.2.1.5,d.162.1.1 108112,108113 2gdzA 267 12.35 c.2.1.2 135043 1id1A 153 12.83 c.2.1.9 62286 2i6tA 303 12.84 1hyhA 309 13.06 c.2.1.5,d.162.1.1 30150,42117 1bdb 277 13.23 2hmvA 144 13.34 c.2.1.9 136615 1f06A 320 13.57 c.2.1.3,d.81.1.3 59556,59557 1pjqA 457 14.07 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1a5zA 319 14.72 c.2.1.5,d.162.1.1 30181,42148 1xseA 295 15.03 c.2.1.2 115925 1vl8A 267 16.74 c.2.1.2 108733 1lluA 342 16.86 b.35.1.2,c.2.1.1 91064,91065 1sayA 361 17.02 c.2.1.4,c.23.12.2 30102,31362 1t2dA 322 17.36 c.2.1.5,d.162.1.1 99084,99085 2v7pA 310 17.44 2aefA 234 18.17 2h6eA 344 18.28 1y8qB 640 18.79 1ldnA 316 18.83 c.2.1.5,d.162.1.1 30166,42133 1ydeA 270 18.92 c.2.1.2 122980 1xhlA 297 18.96 c.2.1.2 109591 2cf5A 357 19.33 1yqdA 366 19.77 1sbyA 254 19.82 c.2.1.2 118930 1hxhA 253 20.09 c.2.1.2 76725 1xg5A 279 20.24 c.2.1.2 115277 2d8aA 348 20.39 2g17A 337 20.83 c.2.1.3,d.81.1.1 134512,134513 2a4kA 263 20.98 c.2.1.2 126156 1yb1A 272 21.04 c.2.1.2 116599 1vjtA 483 21.20 c.2.1.5,d.162.1.2 100833,100834 2r6jA 318 21.41 1x7gA 261 21.69 c.2.1.2 114929 1xu9A 286 22.24 c.2.1.2 116052 1pl8A 356 22.41 b.35.1.2,c.2.1.1 94878,94879 1y5mA 276 22.47 c.2.1.2 122645 1edoA 244 22.80 c.2.1.2 29896 1n5dA 288 23.04 c.2.1.2 80030 1e6wA 260 23.14 c.2.1.2 59326 1pzgA 331 23.34 c.2.1.5,d.162.1.1 95425,95426 2gz1A 366 23.52 c.2.1.3,d.81.1.1 135887,135888 1nffA 260 23.82 c.2.1.2 80457 1yxmA 303 24.36 c.2.1.2 124192 2pnfA 248 24.76 2r00A 336 24.97 2bgkA 278 25.03 c.2.1.2 128480 1h7xA 1025 25.75 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2ag5A 246 25.92 c.2.1.2 126719 1q7bA 244 26.06 c.2.1.2 96026 1b26A 416 27.26 c.2.1.7,c.58.1.1 30232,33880 1xkqA 280 27.28 c.2.1.2 115417 1kyqA 274 27.38 c.2.1.11,e.37.1.1 73281,73282 1vknA 351 27.46 c.2.1.3,d.81.1.1 108676,108677 2ph5A 480 28.53 2d59A 144 28.63 c.2.1.8 131266 1ja9A 274 29.31 c.2.1.2 62817 1spxA 278 29.96 c.2.1.2 98958 1b3bA 415 30.11 c.2.1.7,c.58.1.1 30244,33892 1y8qA 346 30.51 1a71A 374 31.38 b.35.1.2,c.2.1.1 24673,29689 1drw 273 31.40 1u8xX 472 31.79 c.2.1.5,d.162.1.2 107741,107742 1gtmA 419 32.38 c.2.1.7,c.58.1.1 30223,33871 1jw9B 249 32.64 c.111.1.1 67377 2c07A 285 33.18 c.2.1.2 129577 1h5qA 265 33.45 c.2.1.2 60643 1e3sA 261 33.49 c.2.1.2 59201 1kevA 351 34.07 b.35.1.2,c.2.1.1 24749,29765 1ur5A 309 34.73 c.2.1.5,d.162.1.1 99807,99808 1k2wA 256 35.45 c.2.1.2 90927 2zbwA 335 35.79 1gegA 256 36.52 c.2.1.2 29888 1jqbA 351 36.68 b.35.1.2,c.2.1.1 77151,77152 1h2bA 359 36.90 b.35.1.2,c.2.1.1 90543,90544 9ldtA 332 37.12 c.2.1.5,d.162.1.1 30154,42121 2cfcA 250 38.32 1iukA 140 38.51 c.2.1.8 83712 2c2xA 281 39.29 1axgA 374 40.18 b.35.1.2,c.2.1.1 24691,29707 1a4iA 301 40.53 c.2.1.7,c.58.1.2 30278,33926 1cydA 244 41.01 c.2.1.2 29825 2o23A 265 41.48 c.2.1.2 138884 2gn4A 344 41.49 1iy8A 267 42.91 c.2.1.2 83774 1axeA 374 44.85 b.35.1.2,c.2.1.1 24681,29697 3cc8A 230 46.28 1zk4A 251 46.67 c.2.1.2 125176 1b0aA 288 47.07 c.2.1.7,c.58.1.2 30286,33934 2ph3A 245 48.55 1x1tA 260 48.73 c.2.1.2 121597 2ew8A 249 48.81 c.2.1.2 132447 2jahA 247 49.04 1ebdA 455 49.08 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2ewdA 317 49.26 1vl6A 388 49.63 c.2.1.7,c.58.1.3 108724,108725 1zemA 262 49.81 c.2.1.2 124984 1he2A 206 50.53 c.2.1.2 60966 1vqwA 457 52.15 c.3.1.5,c.3.1.5 114028,114029 1ys4A 354 52.27 2pd6A 264 52.48 2czcA 334 53.06 d.81.1.1 131044 1b16A 254 53.66 c.2.1.2 29875 1w6uA 302 53.84 c.2.1.2 114288 1pwxA 254 54.65 c.2.1.2 95262 1ee2A 373 54.98 b.35.1.2,c.2.1.1 24663,29679 2ef0A 301 56.06 1pedA 351 56.22 b.35.1.2,c.2.1.1 24753,29769 1hdoA 206 56.22 c.2.1.2 60965 1fmcA 255 56.84 c.2.1.2 29856 1yovA 537 57.18 c.111.1.2 123785 1vm6A 228 58.36 d.81.1.3,c.2.1.3 108877,118631 1d7oA 297 59.89 c.2.1.2 29907 1s2oA 244 61.55 c.108.1.10 118846 1g0oA 283 63.08 c.2.1.2 60181 3bkwA 243 63.85 1zud1 251 64.35 2ouiA 360 64.67 1y9aA 360 64.71 1wmaA 276 65.13 c.2.1.2 121042 2hq1A 247 65.33 1h7wA 1025 65.73 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1gteA 1025 65.77 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ybvA 283 66.38 c.2.1.2 29948 1f8fA 371 67.03 b.35.1.2,c.2.1.1 83246,83247 1nvmB 312 67.19 c.2.1.3,d.81.1.1 86251,86252 2p91A 285 69.10 2bd0A 244 70.34 c.2.1.2 128321 1mjfA 281 71.23 c.66.1.17 79198 2gasA 307 72.25 1ml4A 308 72.57 c.78.1.1,c.78.1.1 79255,79256 1bdmA 327 73.29 c.2.1.5,d.162.1.1 30137,42104 2ae2A 260 73.79 c.2.1.2 29945 1obbA 480 74.98 c.2.1.5,d.162.1.2 86760,86761 1y1pA 342 75.31 c.2.1.2 122550 1yo6A 250 75.58 c.2.1.2 123769 1mo9A 523 76.90 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2yqzA 263 77.06 1lldA 319 78.16 c.2.1.5,d.162.1.1 30177,42144 2yyyA 343 78.37 1gcoA 261 79.78 c.2.1.2 29884 2z1nA 260 80.07 2yquA 455 81.06 3bioA 304 81.98 1y81A 138 84.30 c.2.1.8 122731 2c29D 337 85.06 1l8qA 324 85.66 a.4.12.2,c.37.1.20 77809,77810 1b8pA 329 85.83 c.2.1.5,d.162.1.1 30147,42114 1vj0A 380 87.39 b.35.1.2,c.2.1.1 100786,100787 1e5dA 402 87.79 c.23.5.1,d.157.1.3 31208,42061 1ae1A 273 89.52 c.2.1.2 29943 1cf2O 337 89.75 c.2.1.3,d.81.1.1 29994,39909 2q46A 253 89.84 c.2.1.2 139825 2dc1A 236 89.93 1dhr 241 89.93