# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 1.24e-08 2ahrA 259 2.27e-08 a.100.1.10,c.2.1.6 126775,126776 2graA 277 5.20e-08 1vpdA 299 8.69e-08 a.100.1.1,c.2.1.6 113951,113952 2rcyA 262 1.04e-07 2h78A 302 1.15e-07 2i76A 276 1.29e-07 2izzA 322 1.56e-07 1pgjA 478 1.64e-07 a.100.1.1,c.2.1.6 18783,30195 1yb4A 295 2.84e-07 2pgd 482 3.02e-07 2cvzA 289 3.19e-07 a.100.1.1,c.2.1.6 130890,130891 2pgdA 482 8.57e-07 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 1.78e-06 a.100.1.12,c.2.1.6 132772,132773 2p4qA 497 3.38e-06 1bg6A 359 1.19e-05 a.100.1.5,c.2.1.6 18810,30214 1evyA 366 1.22e-05 a.100.1.6,c.2.1.6 18811,30215 1txgA 335 1.44e-05 a.100.1.6,c.2.1.6 112775,112776 1x0vA 354 1.63e-05 3c24A 286 3.27e-05 2g5cA 281 3.52e-05 a.100.1.12,c.2.1.6 134646,134647 1z82A 335 6.07e-05 1bg6 359 7.83e-05 2b0jA 358 7.99e-05 a.100.1.11,c.2.1.6 127639,127640 1i36A 264 0.000115 a.100.1.8,c.2.1.6 71108,71109 1np3A 338 0.000354 a.100.1.2,c.2.1.6 85946,85947 1gpjA 404 0.000423 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2pv7A 298 0.000800 1jayA 212 0.003169 c.2.1.6 66478 2hdhA 293 0.004973 a.100.1.3,c.2.1.6 18795,30199 2dpoA 319 0.006264 1nytA 271 0.006431 c.2.1.7,c.58.1.5 86417,86418 1mv8A 436 0.007395 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f0yA 302 0.007922 a.100.1.3,c.2.1.6 18793,30197 1zcjA 463 0.009441 1p77A 272 0.01393 c.2.1.7,c.58.1.5 94214,94215 2eggA 297 0.02637 2d5cA 263 0.02774 2nloA 302 0.03837 1ks9A 291 0.04360 a.100.1.7,c.2.1.6 68857,68858 2hk9A 275 0.04819 1zejA 293 0.05766 1npyA 271 0.07865 c.2.1.7,c.58.1.5 85995,85996 1ff9A 450 0.08133 c.2.1.3,d.81.1.2 30039,39954 2ew2A 316 0.08772 2nadA 393 0.09776 c.2.1.4,c.23.12.1 30090,31350 1npdA 288 0.1032 c.2.1.7,c.58.1.5 80681,80682 1wwkA 307 0.1051 1d4fA 431 0.1118 c.2.1.4,c.23.12.3 30110,31370 1dljA 402 0.1192 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1j4aA 333 0.1243 c.2.1.4,c.23.12.1 71502,71503 1dxy 333 0.1252 2o3jA 481 0.1434 1b3rA 431 0.1461 c.2.1.4,c.23.12.3 30106,31366 1dliA 402 0.1551 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2axqA 467 0.1642 2nacA 393 0.1766 c.2.1.4,c.23.12.1 30088,31348 2g76A 335 0.1864 2dbqA 334 0.1997 1gdhA 320 0.1997 c.2.1.4,c.23.12.1 30095,31355 2nvwA 479 0.2130 c.2.1.3,d.81.1.5 138665,138666 1mx3A 347 0.2203 c.2.1.4,c.23.12.1 79638,79639 1xdwA 331 0.2341 1pjcA 361 0.2406 c.2.1.4,c.23.12.2 30101,31361 2dldA 337 0.2462 c.2.1.4,c.23.12.1 30099,31359 2eklA 313 0.2468 1yrlA 491 0.2544 1dxyA 333 0.2613 c.2.1.4,c.23.12.1 30094,31354 2o7sA 523 0.2623 1nvtA 287 0.2974 c.2.1.7,c.58.1.5 86270,86271 2gcgA 330 0.3147 2o4cA 380 0.3355 1tltA 319 0.3401 c.2.1.3,d.81.1.5 107135,107136 2j6iA 364 0.3403 2fssA 365 0.3551 1ygyA 529 0.3659 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2pi1A 334 0.3671 2g1uA 155 0.3858 2ho3A 325 0.4035 1vi2A 300 0.4166 c.2.1.7,c.58.1.5 100726,100727 1qp8A 303 0.4732 c.2.1.4,c.23.12.1 30092,31352 2cukA 311 0.5017 2d0iA 333 0.5378 2p2sA 336 0.5651 1li4A 432 0.5932 c.2.1.4,c.23.12.3 84616,84617 1lssA 140 0.6055 c.2.1.9 74246 1qmgA 524 0.6218 a.100.1.2,c.2.1.6 18785,30182 1ofgA 381 0.7169 c.2.1.3,d.81.1.5 30064,39979 2q4eA 362 0.7357 1a7aA 432 0.7383 c.2.1.4,c.23.12.3 30104,31364 1sc6A 404 0.7801 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2glxA 332 0.8318 1rydA 387 0.8361 c.2.1.3,d.81.1.5 118801,118802 1luaA 287 0.8489 c.2.1.7,c.58.1.4 78216,78217 1h6dA 433 0.8901 c.2.1.3,d.81.1.5 65656,65657 1zh8A 340 0.9047 c.2.1.3,d.81.1.5 125077,125078 3ceaA 346 0.9509 1l7dA 384 0.9652 c.2.1.4,c.23.12.2 77774,77775 2o4uX 334 0.9816 1psdA 409 0.9843 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 3c85A 183 1.069 1xeaA 323 1.098 c.2.1.3,d.81.1.5 109572,109573 2vojA 371 1.225 2vhxA 377 1.404 2ixaA 444 1.426 1xwfA 431 1.553 c.2.1.4,c.23.12.3 122392,122393 1v8bA 479 1.688 c.2.1.4,c.23.12.3 113564,113565 1omoA 322 1.754 c.2.1.13 104017 1x7dA 350 1.880 c.2.1.13 114927 3c1aA 315 1.911 1gcuA 295 2.095 c.2.1.3,d.81.1.4 30063,39978 1lsuA 147 2.126 c.2.1.9 74250 1uufA 369 2.265 b.35.1.2,c.2.1.1 100006,100007 1ldg 316 2.281 2qytA 317 2.405 1ceqA 316 2.459 c.2.1.5,d.162.1.1 30163,42130 1vllA 334 3.015 c.2.1.13 108834 1e3jA 352 3.469 b.35.1.2,c.2.1.1 24765,29781 1bw9A 356 3.888 c.2.1.7,c.58.1.1 30274,33922 2cdcA 366 3.899 2hsdA 253 4.282 c.2.1.2 29866 1hdcA 253 4.360 c.2.1.2 29862 1ez4A 318 4.382 c.2.1.5,d.162.1.1 64917,64918 6ldhA 329 4.420 c.2.1.5,d.162.1.1 30161,42128 1lluA 342 4.548 b.35.1.2,c.2.1.1 91064,91065 1guzA 310 4.631 c.2.1.5,d.162.1.1 65586,65587 1h2bA 359 5.872 b.35.1.2,c.2.1.1 90543,90544 2hmvA 144 6.202 c.2.1.9 136615 1id1A 153 6.897 c.2.1.9 62286 1pjqA 457 6.932 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1c1dA 355 6.999 c.2.1.7,c.58.1.1 30270,33918 1sayA 361 7.073 c.2.1.4,c.23.12.2 30102,31362 1hyhA 309 7.200 c.2.1.5,d.162.1.1 30150,42117 1bdb 277 7.298 2cf5A 357 7.305 2i6tA 303 7.450 2gptA 523 7.546 2d8aA 348 7.617 1yqdA 366 7.668 2gdzA 267 7.736 c.2.1.2 135043 2aefA 234 7.934 1pl8A 356 8.265 b.35.1.2,c.2.1.1 94878,94879 1xhlA 297 8.764 c.2.1.2 109591 2bkaA 242 8.835 c.2.1.2 128666 1kevA 351 9.282 b.35.1.2,c.2.1.1 24749,29765 2b5wA 357 9.587 2r6jA 318 10.07 2h6eA 344 10.24 1xseA 295 10.42 c.2.1.2 115925 1jqbA 351 10.49 b.35.1.2,c.2.1.1 77151,77152 1lnqA 336 10.50 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1y8qB 640 10.53 1f06A 320 10.68 c.2.1.3,d.81.1.3 59556,59557 2ouiA 360 10.81 1vl8A 267 11.09 c.2.1.2 108733 1lc0A 294 11.46 c.2.1.3,d.81.1.4 73823,73824 1uxjA 309 11.71 c.2.1.5,d.162.1.1 108112,108113 1yb1A 272 11.71 c.2.1.2 116599 2v7pA 310 11.87 2q49A 359 12.11 c.2.1.3,d.81.1.1 139831,139832 1b0aA 288 12.13 c.2.1.7,c.58.1.2 30286,33934 1hxhA 253 12.26 c.2.1.2 76725 1axgA 374 12.38 b.35.1.2,c.2.1.1 24691,29707 1xg5A 279 12.95 c.2.1.2 115277 1f8fA 371 13.19 b.35.1.2,c.2.1.1 83246,83247 1a71A 374 13.26 b.35.1.2,c.2.1.1 24673,29689 1a5zA 319 13.56 c.2.1.5,d.162.1.1 30181,42148 1ydeA 270 13.63 c.2.1.2 122980 2a4kA 263 13.79 c.2.1.2 126156 1nffA 260 14.06 c.2.1.2 80457 1axeA 374 14.14 b.35.1.2,c.2.1.1 24681,29697 1vj0A 380 14.31 b.35.1.2,c.2.1.1 100786,100787 1edoA 244 14.97 c.2.1.2 29896 1ldnA 316 14.97 c.2.1.5,d.162.1.1 30166,42133 1a4iA 301 15.07 c.2.1.7,c.58.1.2 30278,33926 1x7gA 261 15.43 c.2.1.2 114929 1y5mA 276 15.48 c.2.1.2 122645 1q7bA 244 15.54 c.2.1.2 96026 1xu9A 286 15.79 c.2.1.2 116052 1t2dA 322 15.98 c.2.1.5,d.162.1.1 99084,99085 1y9aA 360 16.02 1xkqA 280 16.09 c.2.1.2 115417 2ag5A 246 16.33 c.2.1.2 126719 1kyqA 274 16.40 c.2.1.11,e.37.1.1 73281,73282 1yxmA 303 16.56 c.2.1.2 124192 1vjtA 483 17.05 c.2.1.5,d.162.1.2 100833,100834 1pedA 351 17.27 b.35.1.2,c.2.1.1 24753,29769 1lehA 364 17.27 c.2.1.7,c.58.1.1 30268,33916 1e6wA 260 17.44 c.2.1.2 59326 2d59A 144 17.96 c.2.1.8 131266 1spxA 278 18.11 c.2.1.2 98958 2bgkA 278 18.45 c.2.1.2 128480 2pnfA 248 18.92 1pzgA 331 19.98 c.2.1.5,d.162.1.1 95425,95426 9ldtA 332 20.66 c.2.1.5,d.162.1.1 30154,42121 1sbyA 254 20.72 c.2.1.2 118930 1gegA 256 20.90 c.2.1.2 29888 1h5qA 265 21.04 c.2.1.2 60643 1h7xA 1025 21.07 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1jw9B 249 21.57 c.111.1.1 67377 2ph5A 480 22.06 1ykfA 352 22.07 b.35.1.2,c.2.1.1 24757,29773 1cydA 244 22.10 c.2.1.2 29825 2c2xA 281 22.38 1ja9A 274 22.78 c.2.1.2 62817 2gn4A 344 22.81 1y8qA 346 23.86 2g17A 337 23.94 c.2.1.3,d.81.1.1 134512,134513 1k2wA 256 24.40 c.2.1.2 90927 1iy8A 267 24.88 c.2.1.2 83774 1iukA 140 25.85 c.2.1.8 83712 1w6uA 302 26.12 c.2.1.2 114288 1ee2A 373 26.38 b.35.1.2,c.2.1.1 24663,29679 1e3sA 261 26.71 c.2.1.2 59201 2pd6A 264 27.17 1zemA 262 27.66 c.2.1.2 124984 1u3wA 374 27.81 b.35.1.2,c.2.1.1 113013,113014 2cfcA 250 28.78 1n5dA 288 28.92 c.2.1.2 80030 1u8xX 472 29.21 c.2.1.5,d.162.1.2 107741,107742 1b26A 416 29.49 c.2.1.7,c.58.1.1 30232,33880 2o23A 265 29.95 c.2.1.2 138884 2ef0A 301 30.24 1zk4A 251 30.61 c.2.1.2 125176 1ur5A 309 31.39 c.2.1.5,d.162.1.1 99807,99808 2c07A 285 31.57 c.2.1.2 129577 1p0fA 373 31.62 b.35.1.2,c.2.1.1 87642,87643 1vknA 351 32.65 c.2.1.3,d.81.1.1 108676,108677 1pwxA 254 33.70 c.2.1.2 95262 2zbwA 335 33.85 2ew8A 249 35.51 c.2.1.2 132447 2r00A 336 35.82 3csuA 310 36.04 c.78.1.1,c.78.1.1 35094,35095 2jahA 247 36.20 1nvmB 312 36.68 c.2.1.3,d.81.1.1 86251,86252 1d7oA 297 36.73 c.2.1.2 29907 1s2oA 244 36.90 c.108.1.10 118846 1yovA 537 37.20 c.111.1.2 123785 2ewdA 317 37.92 1gteA 1025 38.25 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ebdA 455 38.98 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1b3bA 415 39.61 c.2.1.7,c.58.1.1 30244,33892 2ph3A 245 39.93 2p91A 285 40.21 1ml4A 308 40.44 c.78.1.1,c.78.1.1 79255,79256 1fmcA 255 41.06 c.2.1.2 29856 2gz1A 366 41.89 c.2.1.3,d.81.1.1 135887,135888 1vl6A 388 43.35 c.2.1.7,c.58.1.3 108724,108725 1he2A 206 43.72 c.2.1.2 60966 1x1tA 260 43.93 c.2.1.2 121597 1xcbA 211 44.16 a.4.5.38,c.2.1.12 109552,109553 1gtmA 419 44.24 c.2.1.7,c.58.1.1 30223,33871 2ae2A 260 44.50 c.2.1.2 29945 1y81A 138 45.06 c.2.1.8 122731 1l8qA 324 45.28 a.4.12.2,c.37.1.20 77809,77810 2qa1A 500 45.59 2o57A 297 46.02 2yyyA 343 49.07 1g0oA 283 49.29 c.2.1.2 60181 2czcA 334 50.11 d.81.1.1 131044 1ekxA 311 50.98 c.78.1.1,c.78.1.1 35088,35089 1y1pA 342 51.85 c.2.1.2 122550 2jhfA 374 52.40 b.35.1.2,c.2.1.1 138314,138315 1ybvA 283 53.06 c.2.1.2 29948 2r0cA 549 53.20 1enp 312 54.55 1h7wA 1025 54.68 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1s6yA 450 54.69 c.2.1.5,d.162.1.2 105314,105315 1rlmA 271 54.94 c.108.1.10 111860 1drw 273 55.57 2z1nA 260 55.62 1ae1A 273 55.89 c.2.1.2 29943 1mo9A 523 56.15 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1othA 321 56.25 c.78.1.1,c.78.1.1 35260,35261 1e5dA 402 56.46 c.23.5.1,d.157.1.3 31208,42061 3bkwA 243 57.12 2dt5A 211 58.18 a.4.5.38,c.2.1.12 131708,131709 2hq1A 247 58.99 1vm6A 228 59.56 d.81.1.3,c.2.1.3 108877,118631 3cc8A 230 59.96 1wpgA 994 60.44 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1xgkA 352 60.59 c.2.1.2 115286 1wmaA 276 60.64 c.2.1.2 121042 1dhr 241 60.74 1udcA 338 60.93 c.2.1.2 29785 1zud1 251 61.29 2gasA 307 61.47 1rkqA 282 62.64 c.108.1.10 97621 1vqwA 457 63.06 c.3.1.5,c.3.1.5 114028,114029 1qo0D 196 63.77 c.23.1.3 31125 1zmdA 474 64.03 1mjfA 281 64.27 c.66.1.17 79198 3bioA 304 64.53 1obbA 480 64.62 c.2.1.5,d.162.1.2 86760,86761 1gcoA 261 64.74 c.2.1.2 29884 2h7mA 269 65.21 c.2.1.2 136219 1k6xA 352 67.31 c.2.1.2 68238 2yquA 455 68.12 1x13A 401 69.03 2yqzA 263 69.78 1uh5A 329 69.97 c.2.1.2 107840 1bdmA 327 71.78 c.2.1.5,d.162.1.1 30137,42104 1zk7A 467 71.86 1yo6A 250 71.97 c.2.1.2 123769 1edzA 320 72.17 c.2.1.7,c.58.1.2 30287,33935 2c5aA 379 72.65 c.2.1.2 129894 3c96A 415 74.01 1fl2A 310 74.14 c.3.1.5,c.3.1.5 59869,59870 1lldA 319 75.22 c.2.1.5,d.162.1.1 30177,42144 1kdgA 546 76.42 c.3.1.2,d.16.1.1 77337,77338 1acmA 310 77.12 c.78.1.1,c.78.1.1 35180,35181 1qydA 313 77.13 c.2.1.2 96583 2bi7A 384 77.33 1n8kA 374 77.46 b.35.1.2,c.2.1.1 80298,80299 2d1yA 256 77.82 c.2.1.2 131151 2bd0A 244 78.91 c.2.1.2 128321 1hwyA 501 79.15 c.2.1.7,c.58.1.1 30262,33910 3ldh 330 79.46 i.12.1.1 46015 1hdoA 206 79.58 c.2.1.2 60965 1kolA 398 79.60 b.35.1.2,c.2.1.1 77474,77475 2bmaA 470 80.68 2gv8A 447 81.19 c.3.1.5,c.3.1.5 135759,135760 2i6uA 307 82.21 2nwqA 272 82.64 2dc1A 236 83.03 2ekpA 239 83.68 1ek6A 348 84.04 c.2.1.2 29800 1qycA 308 84.49 c.2.1.2 96581 1yvvA 336 84.85 1x1eA 239 85.70 1trbA 320 85.98 c.3.1.5,c.3.1.5 30529,30530 1dv1A 449 86.99 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 8atcA 310 87.22 c.78.1.1,c.78.1.1 35132,35133 1rsgA 516 88.18 1b16A 254 88.58 c.2.1.2 29875 1dapA 320 88.81 c.2.1.3,d.81.1.3 30053,39968 2q46A 253 88.84 c.2.1.2 139825