# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 0.000106 2graA 277 0.000181 2ahrA 259 0.000204 a.100.1.10,c.2.1.6 126775,126776 2h78A 302 0.000235 1vpdA 299 0.000243 a.100.1.1,c.2.1.6 113951,113952 2rcyA 262 0.000430 2izzA 322 0.000474 1yb4A 295 0.000576 2cvzA 289 0.000718 a.100.1.1,c.2.1.6 130890,130891 1pgjA 478 0.001008 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 0.001253 2i76A 276 0.001306 2pgdA 482 0.002489 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.002697 a.100.1.12,c.2.1.6 132772,132773 1bg6A 359 0.003599 a.100.1.5,c.2.1.6 18810,30214 2p4qA 497 0.004625 1txgA 335 0.005205 a.100.1.6,c.2.1.6 112775,112776 1x0vA 354 0.009091 1evyA 366 0.01121 a.100.1.6,c.2.1.6 18811,30215 1bg6 359 0.01208 2g5cA 281 0.01490 a.100.1.12,c.2.1.6 134646,134647 3c24A 286 0.01512 1z82A 335 0.02057 1i36A 264 0.02886 a.100.1.8,c.2.1.6 71108,71109 1gpjA 404 0.05572 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1np3A 338 0.05855 a.100.1.2,c.2.1.6 85946,85947 2b0jA 358 0.07750 a.100.1.11,c.2.1.6 127639,127640 1jayA 212 0.1058 c.2.1.6 66478 2pv7A 298 0.1548 2dpoA 319 0.1938 1f0yA 302 0.2602 a.100.1.3,c.2.1.6 18793,30197 1nytA 271 0.2616 c.2.1.7,c.58.1.5 86417,86418 2hdhA 293 0.2902 a.100.1.3,c.2.1.6 18795,30199 1zejA 293 0.3386 1p77A 272 0.3640 c.2.1.7,c.58.1.5 94214,94215 1ks9A 291 0.3718 a.100.1.7,c.2.1.6 68857,68858 2eggA 297 0.4029 1ff9A 450 0.5605 c.2.1.3,d.81.1.2 30039,39954 2nloA 302 0.5746 2d5cA 263 0.6733 1zcjA 463 0.7324 2hk9A 275 0.7755 1wwkA 307 0.9169 1npyA 271 0.9589 c.2.1.7,c.58.1.5 85995,85996 1d4fA 431 1.039 c.2.1.4,c.23.12.3 30110,31370 1j4aA 333 1.074 c.2.1.4,c.23.12.1 71502,71503 1npdA 288 1.154 c.2.1.7,c.58.1.5 80681,80682 2dbqA 334 1.280 2dldA 337 1.388 c.2.1.4,c.23.12.1 30099,31359 2ew2A 316 1.408 1xdwA 331 1.445 2g76A 335 1.448 1mv8A 436 1.478 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dxyA 333 1.518 c.2.1.4,c.23.12.1 30094,31354 2eklA 313 1.526 1b3rA 431 1.538 c.2.1.4,c.23.12.3 30106,31366 1ygyA 529 1.652 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1tltA 319 1.698 c.2.1.3,d.81.1.5 107135,107136 2fssA 365 1.800 2gcgA 330 1.929 1nvtA 287 1.940 c.2.1.7,c.58.1.5 86270,86271 2d0iA 333 1.959 1qp8A 303 2.039 c.2.1.4,c.23.12.1 30092,31352 1vi2A 300 2.041 c.2.1.7,c.58.1.5 100726,100727 2j6iA 364 2.110 1pjcA 361 2.169 c.2.1.4,c.23.12.2 30101,31361 2o4cA 380 2.194 2nacA 393 2.231 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 2.307 c.2.1.4,c.23.12.1 30095,31355 1dxy 333 2.361 2pi1A 334 2.472 1psdA 409 2.517 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2p2sA 336 2.521 2cukA 311 2.552 2q4eA 362 2.724 1zh8A 340 2.753 c.2.1.3,d.81.1.5 125077,125078 2o7sA 523 2.759 1dljA 402 2.823 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2axqA 467 2.837 2o4uX 334 2.880 1luaA 287 2.967 c.2.1.7,c.58.1.4 78216,78217 2glxA 332 3.031 2nadA 393 3.177 c.2.1.4,c.23.12.1 30090,31350 2ixaA 444 3.221 1li4A 432 3.365 c.2.1.4,c.23.12.3 84616,84617 1dliA 402 3.395 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 3ceaA 346 3.509 2nvwA 479 3.796 c.2.1.3,d.81.1.5 138665,138666 2ho3A 325 4.008 1yrlA 491 4.581 1mx3A 347 4.625 c.2.1.4,c.23.12.1 79638,79639 1xwfA 431 4.803 c.2.1.4,c.23.12.3 122392,122393 2vojA 371 4.850 1sayA 361 4.873 c.2.1.4,c.23.12.2 30102,31362 1ofgA 381 4.901 c.2.1.3,d.81.1.5 30064,39979 1v8bA 479 4.946 c.2.1.4,c.23.12.3 113564,113565 1a7aA 432 5.042 c.2.1.4,c.23.12.3 30104,31364 1rydA 387 5.105 c.2.1.3,d.81.1.5 118801,118802 1l7dA 384 5.144 c.2.1.4,c.23.12.2 77774,77775 3c1aA 315 5.574 1omoA 322 5.749 c.2.1.13 104017 2vhxA 377 5.766 1ceqA 316 6.140 c.2.1.5,d.162.1.1 30163,42130 1sc6A 404 6.326 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1ldg 316 7.148 2qytA 317 7.473 1xeaA 323 7.513 c.2.1.3,d.81.1.5 109572,109573 6ldhA 329 7.738 c.2.1.5,d.162.1.1 30161,42128 1ez4A 318 7.914 c.2.1.5,d.162.1.1 64917,64918 1h6dA 433 7.930 c.2.1.3,d.81.1.5 65656,65657 2gptA 523 8.648 1vllA 334 9.525 c.2.1.13 108834 2o3jA 481 9.605 1qmgA 524 9.672 a.100.1.2,c.2.1.6 18785,30182 1hyhA 309 9.856 c.2.1.5,d.162.1.1 30150,42117 2g17A 337 10.67 c.2.1.3,d.81.1.1 134512,134513 1hdcA 253 10.76 c.2.1.2 29862 2g1uA 155 10.77 1x7dA 350 11.15 c.2.1.13 114927 2v7pA 310 12.26 2hsdA 253 12.59 c.2.1.2 29866 1guzA 310 14.28 c.2.1.5,d.162.1.1 65586,65587 1nvmB 312 14.49 c.2.1.3,d.81.1.1 86251,86252 1gcuA 295 14.53 c.2.1.3,d.81.1.4 30063,39978 1uxjA 309 14.70 c.2.1.5,d.162.1.1 108112,108113 2r6jA 318 14.84 2gdzA 267 15.60 c.2.1.2 135043 2ph5A 480 15.92 2bkaA 242 16.82 c.2.1.2 128666 1lssA 140 16.86 c.2.1.9 74246 1t2dA 322 17.74 c.2.1.5,d.162.1.1 99084,99085 1vknA 351 17.78 c.2.1.3,d.81.1.1 108676,108677 1he2A 206 18.01 c.2.1.2 60966 1a5zA 319 19.55 c.2.1.5,d.162.1.1 30181,42148 2jfgA 445 20.15 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2ozpA 345 20.18 1bdb 277 20.29 1ur5A 309 20.48 c.2.1.5,d.162.1.1 99807,99808 1b26A 416 21.09 c.2.1.7,c.58.1.1 30232,33880 2i6tA 303 21.31 1vl6A 388 21.38 c.2.1.7,c.58.1.3 108724,108725 2gz1A 366 21.51 c.2.1.3,d.81.1.1 135887,135888 1ldnA 316 21.93 c.2.1.5,d.162.1.1 30166,42133 2a4kA 263 22.14 c.2.1.2 126156 2q49A 359 22.45 c.2.1.3,d.81.1.1 139831,139832 2ewdA 317 22.60 1b3bA 415 22.75 c.2.1.7,c.58.1.1 30244,33892 1ys4A 354 22.85 1pzgA 331 22.97 c.2.1.5,d.162.1.1 95425,95426 1f06A 320 23.25 c.2.1.3,d.81.1.3 59556,59557 1drw 273 24.74 1n5dA 288 24.78 c.2.1.2 80030 1gtmA 419 24.81 c.2.1.7,c.58.1.1 30223,33871 2r00A 336 25.05 3bioA 304 25.27 1yb1A 272 25.36 c.2.1.2 116599 1sbyA 254 26.59 c.2.1.2 118930 2ag5A 246 27.17 c.2.1.2 126719 1hxhA 253 27.24 c.2.1.2 76725 9ldtA 332 27.55 c.2.1.5,d.162.1.1 30154,42121 1e6wA 260 27.68 c.2.1.2 59326 1lsuA 147 28.18 c.2.1.9 74250 1hdoA 206 28.36 c.2.1.2 60965 1q7bA 244 28.45 c.2.1.2 96026 2czcA 334 28.50 d.81.1.1 131044 1lc0A 294 29.23 c.2.1.3,d.81.1.4 73823,73824 1x7gA 261 29.45 c.2.1.2 114929 1id1A 153 29.97 c.2.1.9 62286 1uufA 369 30.41 b.35.1.2,c.2.1.1 100006,100007 1hwyA 501 32.79 c.2.1.7,c.58.1.1 30262,33910 2bgkA 278 33.20 c.2.1.2 128480 1xg5A 279 33.73 c.2.1.2 115277 1nffA 260 33.76 c.2.1.2 80457 1spxA 278 33.78 c.2.1.2 98958 2cfcA 250 34.76 1h2bA 359 35.19 b.35.1.2,c.2.1.1 90543,90544 1edoA 244 35.56 c.2.1.2 29896 2yyyA 343 35.83 1lldA 319 35.99 c.2.1.5,d.162.1.1 30177,42144 1b8pA 329 36.43 c.2.1.5,d.162.1.1 30147,42114 2c07A 285 36.92 c.2.1.2 129577 1qydA 313 37.52 c.2.1.2 96583 1xhlA 297 37.61 c.2.1.2 109591 1xkqA 280 37.73 c.2.1.2 115417 1udcA 338 37.73 c.2.1.2 29785 1h5qA 265 38.32 c.2.1.2 60643 1y1pA 342 38.51 c.2.1.2 122550 2pd6A 264 38.87 1ja9A 274 39.00 c.2.1.2 62817 2p91A 285 39.51 1xseA 295 39.56 c.2.1.2 115925 1bgvA 449 39.80 c.2.1.7,c.58.1.1 30217,33865 3c85A 183 40.02 1xu9A 286 40.11 c.2.1.2 116052 2pnfA 248 40.35 1k2wA 256 40.47 c.2.1.2 90927 1ydeA 270 41.04 c.2.1.2 122980 1e3sA 261 41.07 c.2.1.2 59201 1y5mA 276 41.53 c.2.1.2 122645 1y8qB 640 42.11 1gegA 256 42.54 c.2.1.2 29888 1iy8A 267 42.95 c.2.1.2 83774 1qycA 308 43.16 c.2.1.2 96581 2nqtA 352 44.07 1yxmA 303 44.32 c.2.1.2 124192 1e3jA 352 44.60 b.35.1.2,c.2.1.1 24765,29781 2ef0A 301 44.81 2o23A 265 44.90 c.2.1.2 138884 1c1dA 355 45.23 c.2.1.7,c.58.1.1 30270,33918 1zk4A 251 45.29 c.2.1.2 125176 1mjfA 281 45.52 c.66.1.17 79198 1cydA 244 46.00 c.2.1.2 29825 1wmaA 276 46.69 c.2.1.2 121042 1w6uA 302 46.93 c.2.1.2 114288 1axeA 374 47.05 b.35.1.2,c.2.1.1 24681,29697 1vl8A 267 47.17 c.2.1.2 108733 3csuA 310 47.56 c.78.1.1,c.78.1.1 35094,35095 2cmdA 312 48.22 c.2.1.5,d.162.1.1 30135,42102 1kevA 351 49.84 b.35.1.2,c.2.1.1 24749,29765 1bw9A 356 50.05 c.2.1.7,c.58.1.1 30274,33922 1ml4A 308 51.46 c.78.1.1,c.78.1.1 79255,79256 1g0oA 283 51.57 c.2.1.2 60181 1pl8A 356 52.11 b.35.1.2,c.2.1.1 94878,94879 1zemA 262 52.62 c.2.1.2 124984 1gcoA 261 53.81 c.2.1.2 29884 8atcA 310 54.51 c.78.1.1,c.78.1.1 35132,35133 1b16A 254 54.62 c.2.1.2 29875 1vjtA 483 54.63 c.2.1.5,d.162.1.2 100833,100834 1drwA 273 54.91 c.2.1.3,d.81.1.3 30057,39972 1bdmA 327 56.19 c.2.1.5,d.162.1.1 30137,42104 1ybvA 283 56.23 c.2.1.2 29948 1hwxA 501 56.62 c.2.1.7,c.58.1.1 30250,33898 1obbA 480 56.69 c.2.1.5,d.162.1.2 86760,86761 1kolA 398 57.32 b.35.1.2,c.2.1.1 77474,77475 2cf5A 357 58.27 1x13A 401 58.55 1xgkA 352 58.57 c.2.1.2 115286 1l3iA 192 58.79 c.66.1.22 77676 1mb4A 370 58.84 c.2.1.3,d.81.1.1 78908,78909 2h6eA 344 58.86 1jw9B 249 59.34 c.111.1.1 67377 1a71A 374 60.53 b.35.1.2,c.2.1.1 24673,29689 1f8fA 371 60.84 b.35.1.2,c.2.1.1 83246,83247 1pg5A 299 63.07 c.78.1.1,c.78.1.1 104146,104147 1cf2O 337 63.49 c.2.1.3,d.81.1.1 29994,39909 1u9jA 358 65.33 c.2.1.2 113243 1fmcA 255 65.50 c.2.1.2 29856 2cdcA 366 65.78 2jahA 247 66.05 1axgA 374 66.31 b.35.1.2,c.2.1.1 24691,29707 2hmvA 144 67.58 c.2.1.9 136615 2hjsA 340 68.00 c.2.1.3,d.81.1.1 136547,136548 1u3wA 374 68.56 b.35.1.2,c.2.1.1 113013,113014 2bllA 345 68.84 c.2.1.2 128733 1ee2A 373 70.39 b.35.1.2,c.2.1.1 24663,29679 1zud1 251 70.56 1y8qA 346 70.85 3ldh 330 70.91 i.12.1.1 46015 2q46A 253 71.07 c.2.1.2 139825 2jhfA 374 71.19 b.35.1.2,c.2.1.1 138314,138315 1xq6A 253 71.36 c.2.1.2 115829 2gasA 307 71.57 2c29D 337 72.70 1acmA 310 73.61 c.78.1.1,c.78.1.1 35180,35181 2bd0A 244 73.94 c.2.1.2 128321 1z7bA 358 74.95 c.2.1.2 124599 1rkxA 357 76.00 c.2.1.2 97631 2d8aA 348 76.15 1yqdA 366 76.61 1c14A 262 76.85 c.2.1.2 29927 1uirA 314 77.96 c.66.1.17 99429 1t4bA 367 79.22 c.2.1.3,d.81.1.1 106406,106407 1ek6A 348 79.32 c.2.1.2 29800 2zbwA 335 79.51 2gn4A 344 79.81 1k89 449 80.36 2a9fA 398 81.04 1u8xX 472 81.39 c.2.1.5,d.162.1.2 107741,107742 1ae1A 273 81.51 c.2.1.2 29943 2b5wA 357 82.29 1pwxA 254 82.79 c.2.1.2 95262 1ykfA 352 82.97 b.35.1.2,c.2.1.1 24757,29773 1jqbA 351 83.77 b.35.1.2,c.2.1.1 77151,77152 1h7xA 1025 84.47 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1pedA 351 85.22 b.35.1.2,c.2.1.1 24753,29769 1ebdA 455 85.43 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1ekxA 311 86.67 c.78.1.1,c.78.1.1 35088,35089 1xel 338 87.37 2p5yA 311 87.53 2i7cA 283 88.58 2ae2A 260 88.67 c.2.1.2 29945 1yovA 537 89.10 c.111.1.2 123785