# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 3.29e-05 2ahrA 259 6.93e-05 a.100.1.10,c.2.1.6 126775,126776 2graA 277 8.47e-05 2rcyA 262 0.000179 2h78A 302 0.000225 1vpdA 299 0.000244 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.000254 2i76A 276 0.000274 1pgjA 478 0.000350 a.100.1.1,c.2.1.6 18783,30195 1yb4A 295 0.000490 2pgd 482 0.000569 2cvzA 289 0.000688 a.100.1.1,c.2.1.6 130890,130891 2pgdA 482 0.001254 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.001446 a.100.1.12,c.2.1.6 132772,132773 2p4qA 497 0.001784 1bg6A 359 0.003876 a.100.1.5,c.2.1.6 18810,30214 3c24A 286 0.005309 1txgA 335 0.007095 a.100.1.6,c.2.1.6 112775,112776 1evyA 366 0.008641 a.100.1.6,c.2.1.6 18811,30215 1x0vA 354 0.01317 1bg6 359 0.01424 2g5cA 281 0.01764 a.100.1.12,c.2.1.6 134646,134647 2b0jA 358 0.02481 a.100.1.11,c.2.1.6 127639,127640 1gpjA 404 0.02836 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1z82A 335 0.02995 1np3A 338 0.04155 a.100.1.2,c.2.1.6 85946,85947 1i36A 264 0.04376 a.100.1.8,c.2.1.6 71108,71109 2pv7A 298 0.08077 1jayA 212 0.1041 c.2.1.6 66478 2dpoA 319 0.1155 1nytA 271 0.1409 c.2.1.7,c.58.1.5 86417,86418 2hdhA 293 0.1851 a.100.1.3,c.2.1.6 18795,30199 1f0yA 302 0.3035 a.100.1.3,c.2.1.6 18793,30197 2nloA 302 0.3038 1p77A 272 0.3134 c.2.1.7,c.58.1.5 94214,94215 2d5cA 263 0.3497 2eggA 297 0.3523 2hk9A 275 0.3986 1zejA 293 0.5309 1zcjA 463 0.6385 1dxy 333 0.6761 1npyA 271 0.7070 c.2.1.7,c.58.1.5 85995,85996 1ff9A 450 0.7112 c.2.1.3,d.81.1.2 30039,39954 1wwkA 307 0.7320 1mv8A 436 0.7548 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1npdA 288 0.7781 c.2.1.7,c.58.1.5 80681,80682 1ks9A 291 0.8104 a.100.1.7,c.2.1.6 68857,68858 2eklA 313 0.8345 1j4aA 333 0.8368 c.2.1.4,c.23.12.1 71502,71503 2g76A 335 0.9187 2axqA 467 0.9446 1d4fA 431 1.019 c.2.1.4,c.23.12.3 30110,31370 1tltA 319 1.082 c.2.1.3,d.81.1.5 107135,107136 2gcgA 330 1.085 1dxyA 333 1.087 c.2.1.4,c.23.12.1 30094,31354 2j6iA 364 1.150 2dbqA 334 1.167 2p2sA 336 1.180 1xdwA 331 1.188 1ygyA 529 1.197 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2nacA 393 1.266 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 1.282 c.2.1.4,c.23.12.1 30095,31355 2nadA 393 1.327 c.2.1.4,c.23.12.1 30090,31350 2o7sA 523 1.339 2fssA 365 1.346 2dldA 337 1.362 c.2.1.4,c.23.12.1 30099,31359 1vi2A 300 1.379 c.2.1.7,c.58.1.5 100726,100727 2d0iA 333 1.392 1b3rA 431 1.442 c.2.1.4,c.23.12.3 30106,31366 1pjcA 361 1.486 c.2.1.4,c.23.12.2 30101,31361 2pi1A 334 1.490 1zh8A 340 1.592 c.2.1.3,d.81.1.5 125077,125078 1nvtA 287 1.598 c.2.1.7,c.58.1.5 86270,86271 2cukA 311 1.623 3c1aA 315 1.731 2q4eA 362 1.754 1qp8A 303 1.916 c.2.1.4,c.23.12.1 30092,31352 1mx3A 347 1.920 c.2.1.4,c.23.12.1 79638,79639 2o4cA 380 2.006 2nvwA 479 2.059 c.2.1.3,d.81.1.5 138665,138666 2o4uX 334 2.112 1sayA 361 2.147 c.2.1.4,c.23.12.2 30102,31362 2glxA 332 2.312 1dliA 402 2.455 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2ixaA 444 2.758 1dljA 402 2.761 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1luaA 287 2.880 c.2.1.7,c.58.1.4 78216,78217 1psdA 409 2.922 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 3ceaA 346 3.088 2ho3A 325 3.270 2ew2A 316 3.464 1rydA 387 3.476 c.2.1.3,d.81.1.5 118801,118802 1sc6A 404 3.790 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1li4A 432 3.792 c.2.1.4,c.23.12.3 84616,84617 1a7aA 432 3.919 c.2.1.4,c.23.12.3 30104,31364 2gptA 523 3.934 1ofgA 381 3.974 c.2.1.3,d.81.1.5 30064,39979 1omoA 322 4.199 c.2.1.13 104017 1vllA 334 4.407 c.2.1.13 108834 2vojA 371 4.460 1l7dA 384 4.752 c.2.1.4,c.23.12.2 77774,77775 2o3jA 481 4.821 1x7dA 350 5.140 c.2.1.13 114927 1xwfA 431 5.150 c.2.1.4,c.23.12.3 122392,122393 2vhxA 377 5.244 1h6dA 433 5.514 c.2.1.3,d.81.1.5 65656,65657 1xeaA 323 5.912 c.2.1.3,d.81.1.5 109572,109573 1qmgA 524 6.202 a.100.1.2,c.2.1.6 18785,30182 1yrlA 491 6.541 1gcuA 295 6.809 c.2.1.3,d.81.1.4 30063,39978 2g1uA 155 7.886 1lssA 140 9.444 c.2.1.9 74246 1v8bA 479 9.606 c.2.1.4,c.23.12.3 113564,113565 1hdcA 253 10.14 c.2.1.2 29862 1bw9A 356 10.22 c.2.1.7,c.58.1.1 30274,33922 2hsdA 253 11.90 c.2.1.2 29866 2qytA 317 12.20 1id1A 153 12.37 c.2.1.9 62286 1uxjA 309 12.38 c.2.1.5,d.162.1.1 108112,108113 1c1dA 355 12.69 c.2.1.7,c.58.1.1 30270,33918 1ldg 316 13.15 1lc0A 294 13.95 c.2.1.3,d.81.1.4 73823,73824 6ldhA 329 14.61 c.2.1.5,d.162.1.1 30161,42128 2r6jA 318 15.65 1ez4A 318 15.80 c.2.1.5,d.162.1.1 64917,64918 3c85A 183 16.40 1nvmB 312 16.68 c.2.1.3,d.81.1.1 86251,86252 2gdzA 267 17.30 c.2.1.2 135043 1hyhA 309 17.79 c.2.1.5,d.162.1.1 30150,42117 1lehA 364 18.67 c.2.1.7,c.58.1.1 30268,33916 2q49A 359 18.73 c.2.1.3,d.81.1.1 139831,139832 1ur5A 309 19.43 c.2.1.5,d.162.1.1 99807,99808 3bioA 304 19.51 1lsuA 147 20.21 c.2.1.9 74250 2i6tA 303 20.81 1he2A 206 20.88 c.2.1.2 60966 1a5zA 319 21.47 c.2.1.5,d.162.1.1 30181,42148 2v7pA 310 22.23 1f06A 320 22.68 c.2.1.3,d.81.1.3 59556,59557 1bdb 277 22.77 2ph5A 480 23.81 1pzgA 331 23.90 c.2.1.5,d.162.1.1 95425,95426 1t2dA 322 24.16 c.2.1.5,d.162.1.1 99084,99085 2g17A 337 26.26 c.2.1.3,d.81.1.1 134512,134513 2bkaA 242 26.81 c.2.1.2 128666 1b26A 416 27.72 c.2.1.7,c.58.1.1 30232,33880 1vknA 351 27.88 c.2.1.3,d.81.1.1 108676,108677 1drw 273 28.42 1n5dA 288 29.36 c.2.1.2 80030 2ewdA 317 29.86 1e6wA 260 30.79 c.2.1.2 59326 2hmvA 144 30.91 c.2.1.9 136615 1wmaA 276 31.06 c.2.1.2 121042 1ldnA 316 31.22 c.2.1.5,d.162.1.1 30166,42133 1hdoA 206 31.44 c.2.1.2 60965 1xg5A 279 32.56 c.2.1.2 115277 1gtmA 419 33.19 c.2.1.7,c.58.1.1 30223,33871 1xseA 295 33.33 c.2.1.2 115925 2czcA 334 33.44 d.81.1.1 131044 1uufA 369 33.74 b.35.1.2,c.2.1.1 100006,100007 1vl6A 388 34.43 c.2.1.7,c.58.1.3 108724,108725 2gz1A 366 34.50 c.2.1.3,d.81.1.1 135887,135888 1hxhA 253 34.58 c.2.1.2 76725 1sbyA 254 34.75 c.2.1.2 118930 1x7gA 261 35.67 c.2.1.2 114929 1b3bA 415 35.92 c.2.1.7,c.58.1.1 30244,33892 2r00A 336 36.10 2a4kA 263 36.30 c.2.1.2 126156 2gasA 307 36.43 1y8qB 640 36.51 2zbwA 335 36.66 1ceqA 316 36.71 c.2.1.5,d.162.1.1 30163,42130 1guzA 310 37.08 c.2.1.5,d.162.1.1 65586,65587 2cdcA 366 37.77 1gegA 256 37.79 c.2.1.2 29888 1ys4A 354 37.81 1xu9A 286 39.19 c.2.1.2 116052 1k2wA 256 39.25 c.2.1.2 90927 1xhlA 297 39.90 c.2.1.2 109591 1q7bA 244 40.34 c.2.1.2 96026 2cfcA 250 42.14 2bgkA 278 43.07 c.2.1.2 128480 2ag5A 246 43.67 c.2.1.2 126719 2yyyA 343 43.84 3csuA 310 43.86 c.78.1.1,c.78.1.1 35094,35095 1vjtA 483 44.92 c.2.1.5,d.162.1.2 100833,100834 1nffA 260 44.94 c.2.1.2 80457 1e3sA 261 45.08 c.2.1.2 59201 1yb1A 272 45.85 c.2.1.2 116599 1jw9B 249 46.50 c.111.1.1 67377 1q1rA 431 46.99 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1u9jA 358 47.82 c.2.1.2 113243 2h6eA 344 48.34 1vl8A 267 49.06 c.2.1.2 108733 1w5fA 353 50.68 c.32.1.1,d.79.2.1 114247,114248 1trb 320 50.96 1hwyA 501 50.97 c.2.1.7,c.58.1.1 30262,33910 1cydA 244 51.34 c.2.1.2 29825 1yxmA 303 51.91 c.2.1.2 124192 1vm6A 228 52.11 d.81.1.3,c.2.1.3 108877,118631 1hwxA 501 52.17 c.2.1.7,c.58.1.1 30250,33898 1ydeA 270 52.61 c.2.1.2 122980 1y5mA 276 52.64 c.2.1.2 122645 1edoA 244 54.60 c.2.1.2 29896 1e3jA 352 54.65 b.35.1.2,c.2.1.1 24765,29781 1y1pA 342 54.72 c.2.1.2 122550 1h5qA 265 54.84 c.2.1.2 60643 2o23A 265 56.18 c.2.1.2 138884 1xhcA 367 56.72 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2ozpA 345 56.75 1lldA 319 56.77 c.2.1.5,d.162.1.1 30177,42144 1u8xX 472 56.93 c.2.1.5,d.162.1.2 107741,107742 1gesA 450 56.94 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1w6uA 302 57.82 c.2.1.2 114288 2c07A 285 57.93 c.2.1.2 129577 1x13A 401 58.50 1xkqA 280 59.51 c.2.1.2 115417 1ml4A 308 59.92 c.78.1.1,c.78.1.1 79255,79256 1pjqA 457 60.04 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ja9A 274 61.52 c.2.1.2 62817 8atcA 310 61.78 c.78.1.1,c.78.1.1 35132,35133 1xgkA 352 62.64 c.2.1.2 115286 1s6yA 450 63.91 c.2.1.5,d.162.1.2 105314,105315 1pl8A 356 64.62 b.35.1.2,c.2.1.1 94878,94879 1yovA 537 64.68 c.111.1.2 123785 9ldtA 332 65.39 c.2.1.5,d.162.1.1 30154,42121 2pnfA 248 66.68 2bllA 345 66.71 c.2.1.2 128733 1j5pA 253 66.78 d.81.1.3,c.2.1.3 71577,83092 1trbA 320 66.96 c.3.1.5,c.3.1.5 30529,30530 2jahA 247 69.01 2dc1A 236 69.14 1ekxA 311 69.53 c.78.1.1,c.78.1.1 35088,35089 2c2xA 281 69.88 1b16A 254 70.47 c.2.1.2 29875 1b8pA 329 70.53 c.2.1.5,d.162.1.1 30147,42114 1kyqA 274 71.00 c.2.1.11,e.37.1.1 73281,73282 2p5yA 311 72.02 1h2bA 359 72.13 b.35.1.2,c.2.1.1 90543,90544 1qycA 308 72.24 c.2.1.2 96581 1nhp 447 72.30 1y8qA 346 73.10 1acmA 310 73.98 c.78.1.1,c.78.1.1 35180,35181 1zk4A 251 74.04 c.2.1.2 125176 1iy8A 267 74.14 c.2.1.2 83774 1kevA 351 76.15 b.35.1.2,c.2.1.1 24749,29765 3ldh 330 76.70 i.12.1.1 46015 1k6xA 352 77.20 c.2.1.2 68238 1rkxA 357 77.80 c.2.1.2 97631 2bd0A 244 78.05 c.2.1.2 128321 1zemA 262 78.18 c.2.1.2 124984 1cf2O 337 78.36 c.2.1.3,d.81.1.1 29994,39909 1gcoA 261 79.52 c.2.1.2 29884 2pd6A 264 80.49 1z7bA 358 80.56 c.2.1.2 124599 1cjcA 460 80.95 c.3.1.1,c.4.1.1 30319,30604 1iukA 140 81.63 c.2.1.8 83712 1l8qA 324 82.70 a.4.12.2,c.37.1.20 77809,77810 2d8aA 348 82.77 1ebdA 455 82.87 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1qydA 313 82.98 c.2.1.2 96583 1kolA 398 85.23 b.35.1.2,c.2.1.1 77474,77475 1zud1 251 85.43 2cf5A 357 87.32 1g0oA 283 88.15 c.2.1.2 60181 1mjfA 281 88.33 c.66.1.17 79198 1qo0D 196 88.51 c.23.1.3 31125 1ybvA 283 88.84 c.2.1.2 29948 1d7yA 408 88.84 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204