# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqgA 263 0.5521 2ahrA 259 0.5887 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 1.063 2izzA 322 1.088 1vpdA 299 1.312 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 1.478 2f1kA 279 1.659 a.100.1.12,c.2.1.6 132772,132773 2graA 277 1.946 1pgjA 478 2.370 a.100.1.1,c.2.1.6 18783,30195 1yb4A 295 2.653 2i76A 276 2.919 2cvzA 289 3.604 a.100.1.1,c.2.1.6 130890,130891 1evyA 366 3.962 a.100.1.6,c.2.1.6 18811,30215 2p4qA 497 3.992 2g5cA 281 4.468 a.100.1.12,c.2.1.6 134646,134647 1z82A 335 5.587 2pgdA 482 5.880 a.100.1.1,c.2.1.6 18778,30190 1x0vA 354 6.222 1bg6A 359 6.693 a.100.1.5,c.2.1.6 18810,30214 1bg6 359 6.694 2pgd 482 6.868 1f0yA 302 7.431 a.100.1.3,c.2.1.6 18793,30197 2dpoA 319 7.651 1txgA 335 7.738 a.100.1.6,c.2.1.6 112775,112776 1jayA 212 8.371 c.2.1.6 66478 1i36A 264 9.134 a.100.1.8,c.2.1.6 71108,71109 2hdhA 293 9.275 a.100.1.3,c.2.1.6 18795,30199 3c24A 286 9.499 2ew2A 316 11.43 1zejA 293 12.23 1mv8A 436 12.33 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1np3A 338 12.63 a.100.1.2,c.2.1.6 85946,85947 1nytA 271 12.69 c.2.1.7,c.58.1.5 86417,86418 1d4fA 431 13.60 c.2.1.4,c.23.12.3 30110,31370 1yrlA 491 13.69 2pv7A 298 16.00 2d5cA 263 16.23 2eggA 297 19.11 1zcjA 463 20.30 2hk9A 275 20.40 2b0jA 358 22.91 a.100.1.11,c.2.1.6 127639,127640 1p77A 272 23.66 c.2.1.7,c.58.1.5 94214,94215 1a7aA 432 25.88 c.2.1.4,c.23.12.3 30104,31364 2qytA 317 26.14 1pjcA 361 28.84 c.2.1.4,c.23.12.2 30101,31361 1li4A 432 30.28 c.2.1.4,c.23.12.3 84616,84617 1gdhA 320 30.64 c.2.1.4,c.23.12.1 30095,31355 1x7dA 350 30.91 c.2.1.13 114927 2g76A 335 31.15 1v8bA 479 31.17 c.2.1.4,c.23.12.3 113564,113565 1b3rA 431 31.23 c.2.1.4,c.23.12.3 30106,31366 2glxA 332 31.83 2o4uX 334 32.43 2eklA 313 32.47 2nacA 393 32.55 c.2.1.4,c.23.12.1 30088,31348 1ur5A 309 32.98 c.2.1.5,d.162.1.1 99807,99808 1bw9A 356 32.99 c.2.1.7,c.58.1.1 30274,33922 2nloA 302 33.17 1qmgA 524 33.37 a.100.1.2,c.2.1.6 18785,30182 1wwkA 307 33.73 1ygyA 529 35.58 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1ff9A 450 35.62 c.2.1.3,d.81.1.2 30039,39954 1npyA 271 35.78 c.2.1.7,c.58.1.5 85995,85996 3ceaA 346 35.89 2cukA 311 35.97 2axqA 467 36.57 1ez4A 318 37.19 c.2.1.5,d.162.1.1 64917,64918 1gpjA 404 38.09 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1psdA 409 38.70 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1uxjA 309 38.79 c.2.1.5,d.162.1.1 108112,108113 1zh8A 340 39.67 c.2.1.3,d.81.1.5 125077,125078 2dbqA 334 40.78 2nvwA 479 41.19 c.2.1.3,d.81.1.5 138665,138666 1npdA 288 41.45 c.2.1.7,c.58.1.5 80681,80682 1ceqA 316 41.48 c.2.1.5,d.162.1.1 30163,42130 1vi2A 300 41.52 c.2.1.7,c.58.1.5 100726,100727 2pi1A 334 43.08 2fk8A 318 43.25 c.66.1.18 133648 2nadA 393 43.88 c.2.1.4,c.23.12.1 30090,31350 2v7pA 310 45.87 2q4eA 362 46.03 1cydA 244 46.15 c.2.1.2 29825 1ks9A 291 46.18 a.100.1.7,c.2.1.6 68857,68858 2ae2A 260 46.44 c.2.1.2 29945 1a5zA 319 46.93 c.2.1.5,d.162.1.1 30181,42148 1ldg 316 49.09 1iy8A 267 49.45 c.2.1.2 83774 1c1dA 355 49.72 c.2.1.7,c.58.1.1 30270,33918 1pzgA 331 50.94 c.2.1.5,d.162.1.1 95425,95426 1sayA 361 51.04 c.2.1.4,c.23.12.2 30102,31362 1yb1A 272 51.18 c.2.1.2 116599 1sc6A 404 51.25 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lehA 364 51.43 c.2.1.7,c.58.1.1 30268,33916 1qp8A 303 52.27 c.2.1.4,c.23.12.1 30092,31352 1dljA 402 52.85 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2a4kA 263 56.07 c.2.1.2 126156 1t2dA 322 56.37 c.2.1.5,d.162.1.1 99084,99085 1xwfA 431 56.75 c.2.1.4,c.23.12.3 122392,122393 1dliA 402 57.32 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1lldA 319 59.34 c.2.1.5,d.162.1.1 30177,42144 1h2bA 359 60.13 b.35.1.2,c.2.1.1 90543,90544 1dxyA 333 60.39 c.2.1.4,c.23.12.1 30094,31354 1ydeA 270 60.40 c.2.1.2 122980 1nvmB 312 60.43 c.2.1.3,d.81.1.1 86251,86252 1lssA 140 61.63 c.2.1.9 74246 2vojA 371 61.87 1bdmA 327 62.68 c.2.1.5,d.162.1.1 30137,42104 1k2wA 256 63.17 c.2.1.2 90927 1vllA 334 63.37 c.2.1.13 108834 2vhxA 377 63.42 1mx3A 347 64.23 c.2.1.4,c.23.12.1 79638,79639 1hyhA 309 64.64 c.2.1.5,d.162.1.1 30150,42117 3c85A 183 64.79 2nwqA 272 65.91 1omoA 322 66.44 c.2.1.13 104017 2d8aA 348 66.57 2gn4A 344 67.17 2hsdA 253 67.50 c.2.1.2 29866 6ldhA 329 68.09 c.2.1.5,d.162.1.1 30161,42128 1xdwA 331 68.09 1nffA 260 68.15 c.2.1.2 80457 2ho3A 325 68.23 1guzA 310 68.42 c.2.1.5,d.162.1.1 65586,65587 1luaA 287 68.80 c.2.1.7,c.58.1.4 78216,78217 1rydA 387 68.87 c.2.1.3,d.81.1.5 118801,118802 1zk4A 251 69.45 c.2.1.2 125176 1xg5A 279 70.36 c.2.1.2 115277 1zemA 262 71.30 c.2.1.2 124984 2gcgA 330 71.43 1q7bA 244 71.50 c.2.1.2 96026 1ldnA 316 73.49 c.2.1.5,d.162.1.1 30166,42133 2pd6A 264 75.16 1y1pA 342 76.07 c.2.1.2 122550 2z1nA 260 76.16 1ofgA 381 76.60 c.2.1.3,d.81.1.5 30064,39979 1obbA 480 77.33 c.2.1.5,d.162.1.2 86760,86761 1dxy 333 77.79 1xkqA 280 77.83 c.2.1.2 115417 1b8pA 329 78.10 c.2.1.5,d.162.1.1 30147,42114 2fssA 365 79.01 3cc8A 230 79.49 1xhlA 297 80.29 c.2.1.2 109591 2dldA 337 80.44 c.2.1.4,c.23.12.1 30099,31359 1qsgA 265 80.56 c.2.1.2 29935 1f8fA 371 80.67 b.35.1.2,c.2.1.1 83246,83247 1lluA 342 80.67 b.35.1.2,c.2.1.1 91064,91065 2p2sA 336 81.08 1bdb 277 81.41 2o3jA 481 82.10 1jqbA 351 82.29 b.35.1.2,c.2.1.1 77151,77152 1l7dA 384 82.31 c.2.1.4,c.23.12.2 77774,77775 1ae1A 273 82.61 c.2.1.2 29943 2i6tA 303 84.02 2h6eA 344 84.62 1c14A 262 84.80 c.2.1.2 29927 1xseA 295 84.88 c.2.1.2 115925 1up7A 417 85.06 c.2.1.5,d.162.1.2 113374,113375 2o4cA 380 85.67 2j6iA 364 86.64 1uufA 369 86.87 b.35.1.2,c.2.1.1 100006,100007 1y8qA 346 87.55 2bgkA 278 88.08 c.2.1.2 128480 2pnfA 248 88.24