# List of top-scoring protein chains for T0393.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 4.31e-07 a.100.1.1,c.2.1.6 113951,113952 3cumA 302 6.99e-07 2i9pA 319 8.72e-07 2gf2A 296 8.94e-07 2cvzA 289 2.22e-06 a.100.1.1,c.2.1.6 130890,130891 2izzA 322 2.44e-06 2gerA 321 2.77e-06 2graA 277 2.79e-06 1yb4A 295 2.90e-06 2p4qA 497 4.81e-06 1yqgA 263 5.57e-06 2rcyA 262 5.79e-06 2uyyA 316 8.12e-06 2pgdA 482 2.54e-05 a.100.1.1,c.2.1.6 18778,30190 2iz1A 474 5.20e-05 2iypA 473 5.39e-05 2iyoA 472 5.63e-05 2ahrA 259 6.61e-05 a.100.1.10,c.2.1.6 126775,126776 1pgjA 478 0.000112 a.100.1.1,c.2.1.6 18783,30195 2o3jA 481 0.000163 2q3eA 467 0.000206 1mv8A 436 0.000458 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1x0vA 354 0.001528 1wpqA 349 0.002000 1z82A 335 0.003173 1evyA 366 0.004497 a.100.1.6,c.2.1.6 18811,30215 2f1kA 279 0.004648 a.100.1.12,c.2.1.6 132772,132773 2pv7A 298 0.005797 1dliA 402 0.006312 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.007821 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2g5cA 281 0.01051 a.100.1.12,c.2.1.6 134646,134647 2plaA 349 0.01255 1yj8A 375 0.02231 1txgA 335 0.02234 a.100.1.6,c.2.1.6 112775,112776 2ew2A 316 0.04082 1zejA 293 0.04608 1np3A 338 0.05464 a.100.1.2,c.2.1.6 85946,85947 2i76A 276 0.05500 3c24A 286 0.06483 1i36A 264 0.08278 a.100.1.8,c.2.1.6 71108,71109 2ofpA 320 0.1130 a.100.1.7,c.2.1.6 139052,139053 1ks9A 291 0.1379 a.100.1.7,c.2.1.6 68857,68858 1yonA 303 0.1446 a.100.1.7,c.2.1.6 123780,123781 1jayA 212 0.1453 c.2.1.6 66478 1il0A 302 0.2467 a.100.1.3,c.2.1.6 66189,66190 1yrlA 491 0.2665 1f17A 310 0.2757 a.100.1.3,c.2.1.6 18797,30201 1lsjA 302 0.2784 a.100.1.3,c.2.1.6 91116,91117 1bg6A 359 0.2803 a.100.1.5,c.2.1.6 18810,30214 1f0yA 302 0.2858 a.100.1.3,c.2.1.6 18793,30197 1lsoA 302 0.3076 a.100.1.3,c.2.1.6 91120,91121 1m75A 302 0.3102 a.100.1.3,c.2.1.6 91212,91213 3hadA 308 0.3113 a.100.1.3,c.2.1.6 18799,30203 3hdhA 302 0.3213 a.100.1.3,c.2.1.6 18805,30209 2hdhA 293 0.3583 a.100.1.3,c.2.1.6 18795,30199 2rafA 209 0.4851 1m76A 302 0.5093 a.100.1.3,c.2.1.6 91216,91217 1zcjA 463 0.6232 2dpoA 319 0.8194 2b0jA 358 0.9136 a.100.1.11,c.2.1.6 127639,127640 2dbqA 334 0.9627 1wwkA 307 1.196 2qytA 317 1.818 2v6bA 304 1.896 2hmvA 144 2.293 c.2.1.9 136615 1lsuA 147 2.310 c.2.1.9 74250 2d5cA 263 2.567 2gcgA 330 3.528 2q50A 328 3.530 2hk8A 269 4.008 2hk9A 275 4.049 2q49A 359 4.390 c.2.1.3,d.81.1.1 139831,139832 1wdkA 715 4.862 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 1pjcA 361 4.889 c.2.1.4,c.23.12.2 30101,31361 1ygyA 529 4.899 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1dxyA 333 5.026 c.2.1.4,c.23.12.1 30094,31354 1j4aA 333 5.076 c.2.1.4,c.23.12.1 71502,71503 1gpjA 404 5.108 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1lldA 319 5.372 c.2.1.5,d.162.1.1 30177,42144 1a5zA 319 5.455 c.2.1.5,d.162.1.1 30181,42148 1qp8A 303 5.537 c.2.1.4,c.23.12.1 30092,31352 1j49A 333 5.588 c.2.1.4,c.23.12.1 71498,71499 2cvoA 366 5.637 c.2.1.3,d.81.1.1 130877,130878 2pi1A 334 6.307 1guzA 310 6.472 c.2.1.5,d.162.1.1 65586,65587 1hyhA 309 6.696 c.2.1.5,d.162.1.1 30150,42117 1y81A 138 6.978 c.2.1.8 122731 2axqA 467 7.543 1gv1A 310 7.587 c.2.1.5,d.162.1.1 65598,65599 2d0iA 333 7.975 1ff9A 450 7.982 c.2.1.3,d.81.1.2 30039,39954 1qmgA 524 8.110 a.100.1.2,c.2.1.6 18785,30182 3bioA 304 8.469 2rirA 300 8.563 1hkuA 358 10.26 c.2.1.4,c.23.12.1 83557,83558 2vhxA 377 10.71 2vojA 371 10.74 1jw9B 249 10.76 c.111.1.1 67377 1x7dA 350 10.98 c.2.1.13 114927 1c0pA 363 11.11 c.4.1.2,d.16.1.3 30647,37934 2vhvA 377 11.15 1xdwA 331 11.35 2dldA 337 11.91 c.2.1.4,c.23.12.1 30099,31359 1v9lA 421 11.93 c.2.1.7,c.58.1.1 113583,113584 1mx3A 347 12.83 c.2.1.4,c.23.12.1 79638,79639 2dc1A 236 12.94 2eklA 313 13.09 1vknA 351 13.93 c.2.1.3,d.81.1.1 108676,108677 2o4cA 380 14.17 1zud1 251 14.73 2p9cA 410 14.75 c.2.1.4,c.23.12.1,d.58.18.1 139556,139557,139558 1zfnA 253 14.98 2g1uA 155 15.08 1ys4A 354 15.29 2i99A 312 15.32 1qycA 308 15.36 c.2.1.2 96581 2ep5A 350 15.92 1ybaA 410 16.56 c.2.1.4,c.23.12.1,d.58.18.1 122872,122873,122874 1psdA 409 16.57 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2r2gA 318 17.12 1cf2O 337 17.16 c.2.1.3,d.81.1.1 29994,39909 1gv0A 310 17.75 c.2.1.5,d.162.1.1 65594,65595 2r6jA 318 17.83 2p9gA 410 18.09 c.2.1.4,c.23.12.1,d.58.18.1 139574,139575,139576 1ur5A 309 19.21 c.2.1.5,d.162.1.1 99807,99808 2a92A 321 20.14 1lssA 140 20.21 c.2.1.9 74246 1uxgA 309 20.72 c.2.1.5,d.162.1.1 108100,108101 2eezA 369 20.73 1uxjA 309 21.76 c.2.1.5,d.162.1.1 108112,108113 1uxkA 309 21.93 c.2.1.5,d.162.1.1 108116,108117 1f06A 320 22.56 c.2.1.3,d.81.1.3 59556,59557 2ixaA 444 22.93 3ceaA 346 23.83 2omeA 336 24.17 9ldtA 331 25.25 c.2.1.5,d.162.1.1 30154,42121 1ldbA 317 25.68 c.2.1.5,d.162.1.1 30174,42141 1ldnA 316 25.74 c.2.1.5,d.162.1.1 30166,42133 2hjrA 328 27.13 2ewdA 317 27.39 2frmA 321 28.70 1omoA 322 30.43 c.2.1.13 104017 1vllA 334 30.46 c.2.1.13 108834 1zh8A 340 30.93 c.2.1.3,d.81.1.5 125077,125078 1tltA 319 32.32 c.2.1.3,d.81.1.5 107135,107136 2ho3A 325 36.06 1i0zA 333 37.16 c.2.1.5,d.162.1.1 61495,61496 1t2fA 333 37.86 c.2.1.5,d.162.1.1 99088,99089 1ggaA 358 38.00 c.2.1.3,d.81.1.1 30002,39917 1wamA 384 38.19 c.4.1.3,d.16.1.7 120811,120812 2cukA 311 38.40 1lpfA 477 39.06 c.3.1.5,c.3.1.5,d.87.1.1 30569,30570,40206 1k3tA 359 39.31 c.2.1.3,d.81.1.1 72022,72023 2bi7A 384 39.32 2q4eA 362 40.34 2czcA 334 40.59 d.81.1.1 131044 1nvtA 287 41.04 c.2.1.7,c.58.1.5 86270,86271 2ldxA 331 42.94 c.2.1.5,d.162.1.1 30159,42126 2jfgA 445 44.30 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 4uagA 437 44.71 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2cmdA 312 45.06 c.2.1.5,d.162.1.1 30135,42102 3c1aA 315 47.65 1gdhA 320 47.76 c.2.1.4,c.23.12.1 30095,31355 5ldhA 333 48.32 c.2.1.5,d.162.1.1 30158,42125 2i6tA 303 48.50 1hyeA 313 50.48 c.2.1.5,d.162.1.1 61400,61401 1j5pA 253 50.91 d.81.1.3,c.2.1.3 71577,83092 1nhpA 447 51.54 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2cf5A 357 52.07 1sc6A 404 52.28 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1npxA 447 53.03 c.3.1.5,c.3.1.5,d.87.1.1 30557,30558,40200 1b7gO 340 53.77 c.2.1.3,d.81.1.1 29992,39907 1nhrA 447 54.06 c.3.1.5,c.3.1.5,d.87.1.1 30553,30554,40198 1nhsA 447 54.35 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2v7pA 310 54.51 1nhqA 447 54.66 c.3.1.5,c.3.1.5,d.87.1.1 30551,30552,40197 1i10A 331 56.17 c.2.1.5,d.162.1.1 61499,61500 2pwzA 312 58.13 c.2.1.5,d.162.1.1 139766,139767 2g82A 331 58.35 c.2.1.3,d.81.1.1 134746,134747 2nloA 302 61.44 1ez4A 318 62.65 c.2.1.5,d.162.1.1 64917,64918 2gz1A 366 63.34 c.2.1.3,d.81.1.1 135887,135888 2vdcG 456 63.83 1h2hA 241 63.98 d.81.1.3,c.2.1.3 70861,83058 1ib6A 312 64.02 c.2.1.5,d.162.1.1 62146,62147 1t2dA 322 64.28 c.2.1.5,d.162.1.1 99084,99085 1y6jA 318 64.69 c.2.1.5,d.162.1.1 116507,116508 1xivA 323 65.52 c.2.1.5,d.162.1.1 122018,122019 2a94A 321 65.77 c.2.1.5,d.162.1.1 126423,126424 1nytA 271 66.42 c.2.1.7,c.58.1.5 86417,86418 2eggA 297 66.64 2yv2A 297 67.24 6ldhA 329 70.06 c.2.1.5,d.162.1.1 30161,42128 1t2eA 322 70.35 c.2.1.5,d.162.1.1 99086,99087 3ladA 476 70.89 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2z1nA 260 71.75 2q1wA 333 72.11 1ybvA 283 74.08 c.2.1.2 29948 1llcA 325 74.13 c.2.1.5,d.162.1.1 30176,42143 1g0oA 283 74.16 c.2.1.2 60181 2dfdA 342 74.50 1v6aA 332 75.50 3cgbA 480 75.91 1oc4A 322 76.27 c.2.1.5,d.162.1.1 92770,92771 1b26A 416 77.20 c.2.1.7,c.58.1.1 30232,33880 2hunA 336 77.33 2h63A 292 77.36 1vl8A 267 77.54 c.2.1.2 108733 1ceqA 316 78.22 c.2.1.5,d.162.1.1 30163,42130 2d4aA 308 78.36 1oi7A 288 78.86 c.2.1.8,c.23.4.1 87049,87050 2bgkA 278 79.10 c.2.1.2 128480 1f8wA 447 79.88 c.3.1.5,c.3.1.5,d.87.1.1 30561,30562,40202 1uufA 369 80.68 b.35.1.2,c.2.1.1 100006,100007 2bw0A 329 84.38 b.46.1.1,c.65.1.1 129303,129304 1r4mB 431 85.46 c.111.1.2 97000 2c29D 337 86.94 2tmgA 415 87.36 c.2.1.7,c.58.1.1 30238,33886 1b3bA 415 88.29 c.2.1.7,c.58.1.1 30244,33892 2o7sA 523 89.10