# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000511 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.000808 2ahrA 259 0.000895 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.001116 1yb4A 295 0.001310 2h78A 302 0.001343 2cvzA 289 0.001640 a.100.1.1,c.2.1.6 130890,130891 2pgd 482 0.002073 2rcyA 262 0.002394 2p4qA 497 0.002412 2pgdA 482 0.002695 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.003021 2f1kA 279 0.004482 a.100.1.12,c.2.1.6 132772,132773 2dpoA 319 0.004994 2ew2A 316 0.005266 3c24A 286 0.005422 1mv8A 436 0.006524 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 0.007318 1np3A 338 0.007556 a.100.1.2,c.2.1.6 85946,85947 2pv7A 298 0.008500 2i76A 276 0.008639 1evyA 366 0.009347 a.100.1.6,c.2.1.6 18811,30215 2g5cA 281 0.00996 a.100.1.12,c.2.1.6 134646,134647 1qmgA 524 0.01037 a.100.1.2,c.2.1.6 18785,30182 1bg6A 359 0.01211 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.01294 1ks9A 291 0.01429 a.100.1.7,c.2.1.6 68857,68858 1z82A 335 0.01720 1yrlA 491 0.01895 1i36A 264 0.01909 a.100.1.8,c.2.1.6 71108,71109 1txgA 335 0.02055 a.100.1.6,c.2.1.6 112775,112776 1f0yA 302 0.02088 a.100.1.3,c.2.1.6 18793,30197 1bg6 359 0.02527 1dliA 402 0.03040 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2qytA 317 0.03547 1dljA 402 0.04513 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zejA 293 0.04887 1zcjA 463 0.04977 1jayA 212 0.1173 c.2.1.6 66478 1qv9A 283 0.4246 c.127.1.1 96356 1vjtA 483 0.7904 c.2.1.5,d.162.1.2 100833,100834 2axqA 467 0.9085 1obbA 480 0.9311 c.2.1.5,d.162.1.2 86760,86761 1guzA 310 0.9778 c.2.1.5,d.162.1.1 65586,65587 2b0jA 358 1.089 a.100.1.11,c.2.1.6 127639,127640 1s6yA 450 1.386 c.2.1.5,d.162.1.2 105314,105315 1pzgA 331 1.413 c.2.1.5,d.162.1.1 95425,95426 1t2dA 322 1.522 c.2.1.5,d.162.1.1 99084,99085 1lldA 319 1.754 c.2.1.5,d.162.1.1 30177,42144 1gdhA 320 1.818 c.2.1.4,c.23.12.1 30095,31355 1ez4A 318 1.847 c.2.1.5,d.162.1.1 64917,64918 1hyhA 309 1.868 c.2.1.5,d.162.1.1 30150,42117 2j6iA 364 1.969 1ygyA 529 2.062 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2ewdA 317 2.172 2nacA 393 2.249 c.2.1.4,c.23.12.1 30088,31348 2fssA 365 2.295 1f06A 320 2.341 c.2.1.3,d.81.1.3 59556,59557 1a5zA 319 2.460 c.2.1.5,d.162.1.1 30181,42148 1li4A 432 2.639 c.2.1.4,c.23.12.3 84616,84617 1up7A 417 2.661 c.2.1.5,d.162.1.2 113374,113375 1x7dA 350 2.674 c.2.1.13 114927 2dbqA 334 2.752 2v7pA 310 2.944 1j4aA 333 3.017 c.2.1.4,c.23.12.1 71502,71503 6ldhA 329 3.081 c.2.1.5,d.162.1.1 30161,42128 1v8bA 479 3.094 c.2.1.4,c.23.12.3 113564,113565 2ho3A 325 3.094 2nvwA 479 3.123 c.2.1.3,d.81.1.5 138665,138666 1wwkA 307 3.249 1mx3A 347 3.295 c.2.1.4,c.23.12.1 79638,79639 1uxjA 309 3.421 c.2.1.5,d.162.1.1 108112,108113 1xdwA 331 3.447 1dxy 333 3.702 2gcgA 330 3.718 1xeaA 323 3.761 c.2.1.3,d.81.1.5 109572,109573 2pi1A 334 3.828 2p2sA 336 3.874 1lssA 140 3.981 c.2.1.9 74246 1u8xX 472 4.011 c.2.1.5,d.162.1.2 107741,107742 1gpjA 404 4.023 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2q4eA 362 4.038 1omoA 322 4.087 c.2.1.13 104017 1h6dA 433 4.288 c.2.1.3,d.81.1.5 65656,65657 2i6tA 303 4.346 3ceaA 346 4.412 2cukA 311 4.431 1dxyA 333 4.508 c.2.1.4,c.23.12.1 30094,31354 1tltA 319 4.709 c.2.1.3,d.81.1.5 107135,107136 2o4uX 334 4.739 2g76A 335 4.794 3bioA 304 4.955 2o4cA 380 5.390 1drwA 273 5.734 c.2.1.3,d.81.1.3 30057,39972 2hk9A 275 5.745 2d5cA 263 5.786 2glxA 332 6.009 1ff9A 450 6.143 c.2.1.3,d.81.1.2 30039,39954 2dc1A 236 6.276 3c1aA 315 6.451 1rydA 387 6.626 c.2.1.3,d.81.1.5 118801,118802 1drw 273 6.738 2eggA 297 6.760 1nvmB 312 6.899 c.2.1.3,d.81.1.1 86251,86252 1sc6A 404 7.192 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2hjsA 340 7.290 c.2.1.3,d.81.1.1 136547,136548 2ejwA 332 8.108 2d0iA 333 8.187 2nloA 302 8.643 1p77A 272 8.794 c.2.1.7,c.58.1.5 94214,94215 1vknA 351 8.847 c.2.1.3,d.81.1.1 108676,108677 2g17A 337 9.235 c.2.1.3,d.81.1.1 134512,134513 1qp8A 303 9.621 c.2.1.4,c.23.12.1 30092,31352 2ixaA 444 9.712 1zh8A 340 9.949 c.2.1.3,d.81.1.5 125077,125078 1pjcA 361 10.27 c.2.1.4,c.23.12.2 30101,31361 2gz1A 366 10.88 c.2.1.3,d.81.1.1 135887,135888 1lsuA 147 11.66 c.2.1.9 74250 2r00A 336 11.82 1npyA 271 11.92 c.2.1.7,c.58.1.5 85995,85996 1nvtA 287 12.85 c.2.1.7,c.58.1.5 86270,86271 2nqtA 352 13.59 2vojA 371 13.71 2r6jA 318 13.97 1nytA 271 14.16 c.2.1.7,c.58.1.5 86417,86418 2eklA 313 14.55 2vhxA 377 14.65 1xgkA 352 15.02 c.2.1.2 115286 2hmvA 144 15.06 c.2.1.9 136615 1o6zA 303 15.39 c.2.1.5,d.162.1.1 81107,81108 1j5pA 253 15.85 d.81.1.3,c.2.1.3 71577,83092 2cmdA 312 16.01 c.2.1.5,d.162.1.1 30135,42102 1lehA 364 16.07 c.2.1.7,c.58.1.1 30268,33916 1mldA 314 16.64 c.2.1.5,d.162.1.1 30122,42089 1y81A 138 16.83 c.2.1.8 122731 2cmd 312 17.51 2g1uA 155 17.62 1l7dA 384 18.68 c.2.1.4,c.23.12.2 77774,77775 1vi2A 300 19.10 c.2.1.7,c.58.1.5 100726,100727 2ph5A 480 19.23 1x13A 401 19.60 2d59A 144 19.70 c.2.1.8 131266 1hdoA 206 20.79 c.2.1.2 60965 2o7sA 523 20.99 1id1A 153 21.39 c.2.1.9 62286 1ys4A 354 23.87 1ebfA 358 24.65 c.2.1.3,d.81.1.2 30033,39948 2aefA 234 24.90 2gn4A 344 27.08 1yqdA 366 27.74 2exxA 306 28.05 1y1pA 342 28.33 c.2.1.2 122550 2b69A 343 28.64 c.2.1.2 127974 1lc0A 294 29.74 c.2.1.3,d.81.1.4 73823,73824 1sb8A 352 30.15 c.2.1.2 105410 2c29D 337 30.54 1luaA 287 30.58 c.2.1.7,c.58.1.4 78216,78217 2cf5A 357 30.65 1yovA 537 31.05 c.111.1.2 123785 2q49A 359 31.24 c.2.1.3,d.81.1.1 139831,139832 3c85A 183 31.29 4uagA 437 31.63 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 3c8mA 331 32.08 1iukA 140 32.15 c.2.1.8 83712 2fk8A 318 32.34 c.66.1.18 133648 2czcA 334 34.38 d.81.1.1 131044 2gasA 307 35.08 2pzmA 330 35.63 1oc2A 348 36.11 c.2.1.2 92765 1y7tA 327 36.38 c.2.1.5,d.162.1.1 122718,122719 1bdmA 327 36.45 c.2.1.5,d.162.1.1 30137,42104 1rkxA 357 37.82 c.2.1.2 97631 1uufA 369 38.13 b.35.1.2,c.2.1.1 100006,100007 2bllA 345 40.25 c.2.1.2 128733 1b7gO 340 40.52 c.2.1.3,d.81.1.1 29992,39907 1q7gA 359 41.27 c.2.1.3,d.81.1.2 96038,96039 1c1dA 355 41.76 c.2.1.7,c.58.1.1 30270,33918 2ozpA 345 42.60 1t4bA 367 43.38 c.2.1.3,d.81.1.1 106406,106407 1lluA 342 43.59 b.35.1.2,c.2.1.1 91064,91065 2a35A 215 43.86 c.2.1.2 126072 3cc8A 230 45.48 2gptA 523 45.76 1y8qA 346 46.06 2z1mA 345 47.24 1i2cA 404 48.08 c.2.1.2 83666 2yqzA 263 52.64 2p4hX 322 54.34 1xu9A 286 54.90 c.2.1.2 116052 1hyeA 313 55.36 c.2.1.5,d.162.1.1 61400,61401 1z7bA 358 56.86 c.2.1.2 124599 1t2aA 375 57.08 c.2.1.2 99078 2dm6A 333 57.38 b.35.1.2,c.2.1.1 131567,131568 1z45A 699 58.02 b.30.5.4,c.2.1.2 124427,124428 1nhsA 447 58.81 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1fl2A 310 59.63 c.3.1.5,c.3.1.5 59869,59870 2bkaA 242 59.89 c.2.1.2 128666 1l1eA 287 59.95 c.66.1.18 73454 1jw9B 249 60.24 c.111.1.1 67377 1wvgA 359 60.62 c.2.1.2 121339 1orrA 347 61.61 c.2.1.2 93460 1xg5A 279 62.06 c.2.1.2 115277 2q1sA 377 63.03 2blnA 305 63.18 b.46.1.1,c.65.1.1 128734,128735 1yxmA 303 64.58 c.2.1.2 124192 1ve3A 227 64.98 c.66.1.43 120010 1nhpA 447 66.62 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2cduA 452 66.93 2gqwA 408 67.68 2gdzA 267 71.18 c.2.1.2 135043 2jfgA 445 76.38 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1kyqA 274 79.87 c.2.1.11,e.37.1.1 73281,73282 1b6rA 355 87.48 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1xxlA 239 87.62 c.66.1.41 116203 2q46A 253 87.69 c.2.1.2 139825 3grs 478 87.85 1w4xA 542 89.22 c.3.1.5,c.3.1.5 109171,109172 1wmaA 276 89.94 c.2.1.2 121042