# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.001693 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.002703 2ahrA 259 0.002710 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.003285 1yb4A 295 0.003519 2h78A 302 0.004313 2cvzA 289 0.004559 a.100.1.1,c.2.1.6 130890,130891 2pgd 482 0.005718 2p4qA 497 0.005915 2graA 277 0.006516 2rcyA 262 0.007189 2pgdA 482 0.007484 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.01033 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.01178 2dpoA 319 0.01280 3c24A 286 0.01441 1mv8A 436 0.01621 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2pv7A 298 0.02021 1np3A 338 0.02100 a.100.1.2,c.2.1.6 85946,85947 2i76A 276 0.02261 2o3jA 481 0.02403 2g5cA 281 0.02443 a.100.1.12,c.2.1.6 134646,134647 1evyA 366 0.02486 a.100.1.6,c.2.1.6 18811,30215 1qmgA 524 0.02711 a.100.1.2,c.2.1.6 18785,30182 1bg6A 359 0.03041 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.03275 1ks9A 291 0.03318 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.03824 1z82A 335 0.03936 1txgA 335 0.04463 a.100.1.6,c.2.1.6 112775,112776 1i36A 264 0.04736 a.100.1.8,c.2.1.6 71108,71109 1f0yA 302 0.05034 a.100.1.3,c.2.1.6 18793,30197 2qytA 317 0.05754 1bg6 359 0.06207 1dliA 402 0.06880 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.09157 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.09458 1zejA 293 0.1210 1jayA 212 0.2334 c.2.1.6 66478 1qv9A 283 0.6367 c.127.1.1 96356 1vjtA 483 1.040 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 1.216 c.2.1.5,d.162.1.2 86760,86761 2b0jA 358 1.830 a.100.1.11,c.2.1.6 127639,127640 2axqA 467 1.900 1guzA 310 1.926 c.2.1.5,d.162.1.1 65586,65587 1lldA 319 2.338 c.2.1.5,d.162.1.1 30177,42144 1t2dA 322 2.460 c.2.1.5,d.162.1.1 99084,99085 1s6yA 450 2.617 c.2.1.5,d.162.1.2 105314,105315 1ez4A 318 2.695 c.2.1.5,d.162.1.1 64917,64918 1hyhA 309 2.726 c.2.1.5,d.162.1.1 30150,42117 1pzgA 331 2.879 c.2.1.5,d.162.1.1 95425,95426 1gdhA 320 3.470 c.2.1.4,c.23.12.1 30095,31355 2j6iA 364 3.494 2ewdA 317 3.500 1f06A 320 3.513 c.2.1.3,d.81.1.3 59556,59557 2nvwA 479 3.639 c.2.1.3,d.81.1.5 138665,138666 1ygyA 529 3.667 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2fssA 365 3.921 2nacA 393 4.115 c.2.1.4,c.23.12.1 30088,31348 6ldhA 329 4.191 c.2.1.5,d.162.1.1 30161,42128 1li4A 432 4.346 c.2.1.4,c.23.12.3 84616,84617 2v7pA 310 4.354 2i6tA 303 4.444 1omoA 322 4.583 c.2.1.13 104017 1a5zA 319 4.599 c.2.1.5,d.162.1.1 30181,42148 2dbqA 334 4.625 1x7dA 350 4.952 c.2.1.13 114927 1mx3A 347 5.115 c.2.1.4,c.23.12.1 79638,79639 1up7A 417 5.146 c.2.1.5,d.162.1.2 113374,113375 1j4aA 333 5.198 c.2.1.4,c.23.12.1 71502,71503 1v8bA 479 5.477 c.2.1.4,c.23.12.3 113564,113565 1h6dA 433 5.548 c.2.1.3,d.81.1.5 65656,65657 1wwkA 307 5.632 2eklA 313 5.762 2ho3A 325 5.859 1dxy 333 5.866 1gpjA 404 5.882 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2q4eA 362 5.921 3ceaA 346 5.926 1uxjA 309 6.029 c.2.1.5,d.162.1.1 108112,108113 2p2sA 336 6.053 1xdwA 331 6.077 2pi1A 334 6.128 2o4cA 380 6.144 1u8xX 472 6.233 c.2.1.5,d.162.1.2 107741,107742 1xeaA 323 6.267 c.2.1.3,d.81.1.5 109572,109573 2gcgA 330 6.440 1lssA 140 6.783 c.2.1.9 74246 2cukA 311 6.790 1dxyA 333 6.851 c.2.1.4,c.23.12.1 30094,31354 3bioA 304 7.034 1tltA 319 7.248 c.2.1.3,d.81.1.5 107135,107136 2o4uX 334 7.370 2g76A 335 7.721 2eggA 297 8.032 1drwA 273 8.482 c.2.1.3,d.81.1.3 30057,39972 3c1aA 315 9.151 1ff9A 450 9.228 c.2.1.3,d.81.1.2 30039,39954 1drw 273 9.463 2dc1A 236 9.551 1nvmB 312 9.755 c.2.1.3,d.81.1.1 86251,86252 2glxA 332 9.761 1rydA 387 9.799 c.2.1.3,d.81.1.5 118801,118802 2hk9A 275 9.824 1sc6A 404 10.06 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2g17A 337 10.26 c.2.1.3,d.81.1.1 134512,134513 2d5cA 263 11.14 1p77A 272 11.34 c.2.1.7,c.58.1.5 94214,94215 2d0iA 333 11.41 2hjsA 340 11.46 c.2.1.3,d.81.1.1 136547,136548 1vknA 351 12.54 c.2.1.3,d.81.1.1 108676,108677 1zh8A 340 12.78 c.2.1.3,d.81.1.5 125077,125078 2ixaA 444 13.06 1lsuA 147 13.47 c.2.1.9 74250 1pjcA 361 13.56 c.2.1.4,c.23.12.2 30101,31361 2ejwA 332 14.89 2gz1A 366 15.10 c.2.1.3,d.81.1.1 135887,135888 2r00A 336 15.21 1qp8A 303 16.06 c.2.1.4,c.23.12.1 30092,31352 1nytA 271 16.86 c.2.1.7,c.58.1.5 86417,86418 2ph5A 480 17.32 2nloA 302 17.77 2r6jA 318 18.47 2vojA 371 18.47 1nvtA 287 19.68 c.2.1.7,c.58.1.5 86270,86271 1o6zA 303 19.99 c.2.1.5,d.162.1.1 81107,81108 2vhxA 377 20.25 1lehA 364 21.08 c.2.1.7,c.58.1.1 30268,33916 2hmvA 144 21.13 c.2.1.9 136615 1mldA 314 21.91 c.2.1.5,d.162.1.1 30122,42089 1x13A 401 22.80 1npyA 271 23.10 c.2.1.7,c.58.1.5 85995,85996 1ys4A 354 23.66 1j5pA 253 23.78 d.81.1.3,c.2.1.3 71577,83092 1y81A 138 24.06 c.2.1.8 122731 1xgkA 352 24.80 c.2.1.2 115286 2nqtA 352 25.21 1l7dA 384 25.74 c.2.1.4,c.23.12.2 77774,77775 2cmdA 312 26.75 c.2.1.5,d.162.1.1 30135,42102 1yovA 537 27.72 c.111.1.2 123785 1vi2A 300 28.15 c.2.1.7,c.58.1.5 100726,100727 2cmd 312 29.25 2g1uA 155 29.28 2d59A 144 29.35 c.2.1.8 131266 2q49A 359 29.63 c.2.1.3,d.81.1.1 139831,139832 1y1pA 342 32.72 c.2.1.2 122550 1id1A 153 32.85 c.2.1.9 62286 2c29D 337 33.58 1yqdA 366 33.65 3c85A 183 33.92 1lc0A 294 34.81 c.2.1.3,d.81.1.4 73823,73824 2fk8A 318 35.49 c.66.1.18 133648 2gn4A 344 36.03 2aefA 234 37.10 1iukA 140 38.66 c.2.1.8 83712 2cf5A 357 39.41 2exxA 306 39.58 1ebfA 358 39.98 c.2.1.3,d.81.1.2 30033,39948 1hdoA 206 41.88 c.2.1.2 60965 1luaA 287 42.21 c.2.1.7,c.58.1.4 78216,78217 1y7tA 327 42.49 c.2.1.5,d.162.1.1 122718,122719 2czcA 334 43.86 d.81.1.1 131044 1sb8A 352 44.19 c.2.1.2 105410 2gasA 307 45.93 2ozpA 345 46.52 1b7gO 340 48.12 c.2.1.3,d.81.1.1 29992,39907 1q7gA 359 49.25 c.2.1.3,d.81.1.2 96038,96039 3cc8A 230 49.68 2b69A 343 49.70 c.2.1.2 127974 2bllA 345 52.04 c.2.1.2 128733 1oc2A 348 52.86 c.2.1.2 92765 1uufA 369 54.26 b.35.1.2,c.2.1.1 100006,100007 1bdmA 327 54.50 c.2.1.5,d.162.1.1 30137,42104 2pk3A 321 54.78 2a35A 215 55.03 c.2.1.2 126072 1lluA 342 56.81 b.35.1.2,c.2.1.1 91064,91065 1i2cA 404 57.80 c.2.1.2 83666 2p4hX 322 60.36 2pzmA 330 60.54 3c8mA 331 60.84 1hyeA 313 63.93 c.2.1.5,d.162.1.1 61400,61401 2o7sA 523 64.50 1xu9A 286 64.61 c.2.1.2 116052 1y8qA 346 67.69 1ve3A 227 68.68 c.66.1.43 120010 1fl2A 310 71.53 c.3.1.5,c.3.1.5 59869,59870 1rkxA 357 71.99 c.2.1.2 97631 1wmaA 276 72.35 c.2.1.2 121042 1xg5A 279 76.35 c.2.1.2 115277 1c1dA 355 76.60 c.2.1.7,c.58.1.1 30270,33918 2yqzA 263 77.45 2z1mA 345 78.17 1z7bA 358 78.83 c.2.1.2 124599 1yxmA 303 78.93 c.2.1.2 124192 1t4bA 367 78.94 c.2.1.3,d.81.1.1 106406,106407 1l1eA 287 81.37 c.66.1.18 73454 2bkaA 242 86.79 c.2.1.2 128666 1jw9B 249 87.45 c.111.1.1 67377 4uagA 437 87.51 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2gdzA 267 88.11 c.2.1.2 135043 1xxlA 239 88.42 c.66.1.41 116203 1kyqA 274 89.74 c.2.1.11,e.37.1.1 73281,73282