# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000143 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000235 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000265 1yqgA 263 0.000349 1yb4A 295 0.000383 2cvzA 289 0.000498 a.100.1.1,c.2.1.6 130890,130891 2h78A 302 0.000506 2rcyA 262 0.000612 2pgd 482 0.000635 2graA 277 0.000682 2p4qA 497 0.000812 2pgdA 482 0.000945 a.100.1.1,c.2.1.6 18778,30190 1mv8A 436 0.002238 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 3c24A 286 0.002262 2dpoA 319 0.002743 2f1kA 279 0.002773 a.100.1.12,c.2.1.6 132772,132773 2i76A 276 0.002790 2ew2A 316 0.003548 2o3jA 481 0.003583 1np3A 338 0.003706 a.100.1.2,c.2.1.6 85946,85947 2pv7A 298 0.004304 2g5cA 281 0.004551 a.100.1.12,c.2.1.6 134646,134647 1qmgA 524 0.004753 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 0.005125 a.100.1.6,c.2.1.6 18811,30215 1bg6A 359 0.005343 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.006761 1yrlA 491 0.007369 1z82A 335 0.008223 1i36A 264 0.009688 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 0.01036 a.100.1.7,c.2.1.6 68857,68858 1f0yA 302 0.01044 a.100.1.3,c.2.1.6 18793,30197 1bg6 359 0.01210 1dliA 402 0.01244 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.01293 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1txgA 335 0.01552 a.100.1.6,c.2.1.6 112775,112776 1zejA 293 0.03096 1zcjA 463 0.03331 2qytA 317 0.04713 1jayA 212 0.04830 c.2.1.6 66478 1qv9A 283 0.3744 c.127.1.1 96356 2axqA 467 0.5230 1vjtA 483 0.7058 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 0.7077 c.2.1.5,d.162.1.2 86760,86761 2b0jA 358 0.9195 a.100.1.11,c.2.1.6 127639,127640 1guzA 310 1.169 c.2.1.5,d.162.1.1 65586,65587 1s6yA 450 1.455 c.2.1.5,d.162.1.2 105314,105315 2ho3A 325 1.499 2nacA 393 1.548 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 1.561 c.2.1.4,c.23.12.1 30095,31355 2nvwA 479 1.598 c.2.1.3,d.81.1.5 138665,138666 2fssA 365 1.723 1hyhA 309 1.728 c.2.1.5,d.162.1.1 30150,42117 2q4eA 362 1.738 2p2sA 336 1.769 2j6iA 364 1.790 1xeaA 323 1.826 c.2.1.3,d.81.1.5 109572,109573 2o4uX 334 1.991 1mx3A 347 2.051 c.2.1.4,c.23.12.1 79638,79639 1f06A 320 2.122 c.2.1.3,d.81.1.3 59556,59557 1ygyA 529 2.127 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1t2dA 322 2.177 c.2.1.5,d.162.1.1 99084,99085 1pzgA 331 2.237 c.2.1.5,d.162.1.1 95425,95426 2dbqA 334 2.425 1tltA 319 2.432 c.2.1.3,d.81.1.5 107135,107136 2dc1A 236 2.446 1wwkA 307 2.482 1ez4A 318 2.504 c.2.1.5,d.162.1.1 64917,64918 2glxA 332 2.554 1j4aA 333 2.730 c.2.1.4,c.23.12.1 71502,71503 3ceaA 346 2.761 1lssA 140 2.893 c.2.1.9 74246 1h6dA 433 2.931 c.2.1.3,d.81.1.5 65656,65657 1up7A 417 2.957 c.2.1.5,d.162.1.2 113374,113375 1v8bA 479 2.959 c.2.1.4,c.23.12.3 113564,113565 1xdwA 331 2.992 1gpjA 404 2.996 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1sc6A 404 3.043 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1li4A 432 3.164 c.2.1.4,c.23.12.3 84616,84617 1dxy 333 3.195 2eklA 313 3.386 1x7dA 350 3.387 c.2.1.13 114927 1drwA 273 3.444 c.2.1.3,d.81.1.3 30057,39972 2gcgA 330 3.597 2g76A 335 3.637 1lldA 319 3.663 c.2.1.5,d.162.1.1 30177,42144 1dxyA 333 3.697 c.2.1.4,c.23.12.1 30094,31354 2i6tA 303 3.863 2v7pA 310 3.938 3c1aA 315 3.989 6ldhA 329 4.008 c.2.1.5,d.162.1.1 30161,42128 2ewdA 317 4.107 1u8xX 472 4.193 c.2.1.5,d.162.1.2 107741,107742 3bioA 304 4.264 2o4cA 380 4.333 2pi1A 334 4.517 1rydA 387 4.518 c.2.1.3,d.81.1.5 118801,118802 1drw 273 4.570 1omoA 322 4.781 c.2.1.13 104017 2cukA 311 5.020 1zh8A 340 5.332 c.2.1.3,d.81.1.5 125077,125078 1pjcA 361 5.739 c.2.1.4,c.23.12.2 30101,31361 2d0iA 333 5.831 2hk9A 275 5.886 1a5zA 319 6.082 c.2.1.5,d.162.1.1 30181,42148 1lsuA 147 6.301 c.2.1.9 74250 1lehA 364 6.342 c.2.1.7,c.58.1.1 30268,33916 2g17A 337 6.677 c.2.1.3,d.81.1.1 134512,134513 2ixaA 444 6.681 1ff9A 450 6.708 c.2.1.3,d.81.1.2 30039,39954 1uxjA 309 7.189 c.2.1.5,d.162.1.1 108112,108113 2eggA 297 7.422 2d5cA 263 7.483 1y81A 138 8.105 c.2.1.8 122731 1nvmB 312 8.288 c.2.1.3,d.81.1.1 86251,86252 1vknA 351 8.409 c.2.1.3,d.81.1.1 108676,108677 1p77A 272 8.998 c.2.1.7,c.58.1.5 94214,94215 2hmvA 144 9.371 c.2.1.9 136615 2nloA 302 9.524 1qp8A 303 9.576 c.2.1.4,c.23.12.1 30092,31352 2g1uA 155 9.602 2vhxA 377 10.80 2hjsA 340 11.00 c.2.1.3,d.81.1.1 136547,136548 2d59A 144 12.60 c.2.1.8 131266 2ejwA 332 12.86 2vojA 371 13.06 3c85A 183 13.67 1iukA 140 13.82 c.2.1.8 83712 2aefA 234 14.70 1nytA 271 15.92 c.2.1.7,c.58.1.5 86417,86418 2r6jA 318 16.00 1nvtA 287 16.66 c.2.1.7,c.58.1.5 86270,86271 1lc0A 294 16.69 c.2.1.3,d.81.1.4 73823,73824 1npyA 271 16.77 c.2.1.7,c.58.1.5 85995,85996 1x13A 401 17.33 2q49A 359 18.21 c.2.1.3,d.81.1.1 139831,139832 1j5pA 253 20.07 d.81.1.3,c.2.1.3 71577,83092 1id1A 153 20.45 c.2.1.9 62286 2fk8A 318 20.88 c.66.1.18 133648 1vi2A 300 21.23 c.2.1.7,c.58.1.5 100726,100727 2o7sA 523 21.34 1yqdA 366 21.83 2cf5A 357 21.85 2r00A 336 22.41 1oi7A 288 22.55 c.2.1.8,c.23.4.1 87049,87050 1y1pA 342 23.41 c.2.1.2 122550 1l7dA 384 24.34 c.2.1.4,c.23.12.2 77774,77775 1lluA 342 24.97 b.35.1.2,c.2.1.1 91064,91065 1xgkA 352 25.42 c.2.1.2 115286 2gz1A 366 25.81 c.2.1.3,d.81.1.1 135887,135888 1o6zA 303 27.25 c.2.1.5,d.162.1.1 81107,81108 2bllA 345 27.39 c.2.1.2 128733 2cmdA 312 27.96 c.2.1.5,d.162.1.1 30135,42102 1mldA 314 28.26 c.2.1.5,d.162.1.1 30122,42089 2c29D 337 28.82 2b69A 343 29.26 c.2.1.2 127974 3c8mA 331 30.36 1luaA 287 30.41 c.2.1.7,c.58.1.4 78216,78217 1hdoA 206 31.52 c.2.1.2 60965 4uagA 437 32.64 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2nqtA 352 32.74 1ebfA 358 32.83 c.2.1.3,d.81.1.2 30033,39948 1z7bA 358 33.44 c.2.1.2 124599 2ph5A 480 33.62 1uufA 369 33.94 b.35.1.2,c.2.1.1 100006,100007 1t4bA 367 34.36 c.2.1.3,d.81.1.1 106406,106407 1ys4A 354 35.26 1q7gA 359 35.88 c.2.1.3,d.81.1.2 96038,96039 1c1dA 355 35.93 c.2.1.7,c.58.1.1 30270,33918 1sb8A 352 36.23 c.2.1.2 105410 2gasA 307 36.59 2exxA 306 36.96 2yv1A 294 37.13 2gn4A 344 37.27 1oc2A 348 39.30 c.2.1.2 92765 2pzmA 330 41.45 1yovA 537 43.19 c.111.1.2 123785 1wvgA 359 43.52 c.2.1.2 121339 2gptA 523 44.19 3cc8A 230 44.63 1b7gO 340 44.69 c.2.1.3,d.81.1.1 29992,39907 1nhsA 447 45.25 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1nhpA 447 45.41 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2yqzA 263 45.67 1i2cA 404 46.39 c.2.1.2 83666 1yxmA 303 47.60 c.2.1.2 124192 2blnA 305 48.76 b.46.1.1,c.65.1.1 128734,128735 2czcA 334 49.76 d.81.1.1 131044 2z1mA 345 49.90 2cmd 312 50.10 1yzhA 214 52.58 c.66.1.53 124277 2pk3A 321 52.62 1ve3A 227 53.69 c.66.1.43 120010 2ozpA 345 55.32 1z45A 699 55.36 b.30.5.4,c.2.1.2 124427,124428 2gdzA 267 57.23 c.2.1.2 135043 1xu9A 286 58.21 c.2.1.2 116052 1fl2A 310 59.47 c.3.1.5,c.3.1.5 59869,59870 1q1rA 431 59.80 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2cduA 452 59.90 1kpgA 287 60.34 c.66.1.18 68735 1jw9B 249 60.34 c.111.1.1 67377 1l1eA 287 60.34 c.66.1.18 73454 3ckkA 235 61.55 1duvG 333 62.28 c.78.1.1,c.78.1.1 35228,35229 1t2aA 375 62.56 c.2.1.2 99078 1kyqA 274 62.93 c.2.1.11,e.37.1.1 73281,73282 2o57A 297 63.37 1rkxA 357 63.55 c.2.1.2 97631 2yyyA 343 63.70 1y7tA 327 65.72 c.2.1.5,d.162.1.1 122718,122719 1xtpA 254 65.86 c.66.1.42 116031 2p4hX 322 66.69 2p5yA 311 66.70 1xg5A 279 66.73 c.2.1.2 115277 2dm6A 333 67.34 b.35.1.2,c.2.1.1 131567,131568 1orrA 347 69.71 c.2.1.2 93460 1vj0A 380 70.02 b.35.1.2,c.2.1.1 100786,100787 2bkaA 242 70.04 c.2.1.2 128666 2hcyA 347 70.71 2gqwA 408 71.12 2j3hA 345 71.92 2csuA 457 72.32 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2nxcA 254 72.62 c.66.1.39 138739 1b6rA 355 76.90 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1yb2A 275 77.39 c.66.1.13 122868 2jfgA 445 77.85 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1f8fA 371 80.69 b.35.1.2,c.2.1.1 83246,83247 1yqzA 438 81.57 2a35A 215 83.16 c.2.1.2 126072 1othA 321 83.27 c.78.1.1,c.78.1.1 35260,35261 1vbjA 281 83.65 1y8qA 346 84.82 2eihA 343 85.47 1vl5A 260 86.33 c.66.1.41 108720 2b9eA 303 88.10 c.66.1.38 128124 1gteA 1025 88.15 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1eq2A 310 89.27 c.2.1.2 29814 2yquA 455 89.70 1o89A 345 89.73 b.35.1.2,c.2.1.1 92644,92645 1p0fA 373 89.73 b.35.1.2,c.2.1.1 87642,87643 2zbwA 335 89.80